Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MTND3P16-201ENST00000452205 344 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 AC027575.1-201ENST00000481064 460 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 SNORD60.2-201ENST00000516883 86 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 SNORA44.1-201ENST00000517031 108 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS35Q96QK1 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS35Q96QK1 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS35Q96QK1 SCOCP1-201ENST00000554676 349 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.58□□□□□ -2.16
VPS35Q96QK1 Z99129.1-201ENST00000612510 255 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 AL359880.1-201ENST00000621879 266 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
VPS35Q96QK1 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
VPS35Q96QK1 RNU6-661P-201ENST00000362409 107 ntBASIC1.57□□□□□ -2.16
VPS35Q96QK1 MIR30A-201ENST00000385092 71 ntBASIC1.57□□□□□ -2.16
VPS35Q96QK1 CALM2P3-201ENST00000400429 449 ntBASIC1.57□□□□□ -2.16
VPS35Q96QK1 MRPS10P2-201ENST00000431226 381 ntBASIC1.57□□□□□ -2.16
VPS35Q96QK1 AMD1P1-201ENST00000457220 922 ntBASIC1.57□□□□□ -2.16
VPS35Q96QK1 AC010531.2-201ENST00000465012 153 ntBASIC1.57□□□□□ -2.16
VPS35Q96QK1 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.57□□□□□ -2.16
VPS35Q96QK1 AC114801.2-201ENST00000503825 781 ntBASIC1.57□□□□□ -2.16
VPS35Q96QK1 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.57□□□□□ -2.16
VPS35Q96QK1 DEFB131C-201ENST00000528817 165 ntBASIC1.57□□□□□ -2.16
VPS35Q96QK1 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.57□□□□□ -2.16
VPS35Q96QK1 AL157687.1-201ENST00000554853 619 ntBASIC1.57□□□□□ -2.16
VPS35Q96QK1 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.57□□□□□ -2.16
VPS35Q96QK1 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.57□□□□□ -2.16
VPS35Q96QK1 NBR2-204ENST00000587322 63 ntBASIC1.57□□□□□ -2.16
VPS35Q96QK1 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS35Q96QK1 AC124864.2-201ENST00000624736 186 ntBASIC1.57□□□□□ -2.16
VPS35Q96QK1 MIR424-201ENST00000362227 98 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 Y_RNA.167-201ENST00000363735 109 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 SNORA29-201ENST00000384183 140 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 SNORD116-2-201ENST00000384274 95 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 SNORD116-6-201ENST00000384711 96 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 EIF4E2P1-201ENST00000393781 255 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
VPS35Q96QK1 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.56□□□□□ -2.16
VPS35Q96QK1 MTCO1P44-201ENST00000441935 243 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 AC007395.1-201ENST00000451333 677 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.56□□□□□ -2.16
VPS35Q96QK1 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.56□□□□□ -2.16
VPS35Q96QK1 MIR4285-201ENST00000581001 85 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 PIGPP4-201ENST00000584447 307 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 BX248123.2-201ENST00000606318 124 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 AC083806.3-201ENST00000614016 455 ntBASIC1.56□□□□□ -2.16
VPS35Q96QK1 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.56□□□□□ -2.16
VPS35Q96QK1 AL159152.1-201ENST00000635019 2587 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 RNU5B-2P-201ENST00000363036 113 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 Y_RNA.123-201ENST00000363338 102 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 RNU6-112P-201ENST00000363599 104 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 Y_RNA.231-201ENST00000364358 102 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 RNU6-214P-201ENST00000384130 107 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 RNU6-482P-201ENST00000391068 107 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.55□□□□□ -2.16
VPS35Q96QK1 MIR934-201ENST00000401241 83 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 RPL21P111-201ENST00000418453 477 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 MTND1P29-201ENST00000448112 647 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 AC107401.1-201ENST00000503426 685 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 AC092436.3-201ENST00000511788 257 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 Y_RNA.693-201ENST00000516641 110 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.55□□□□□ -2.16
VPS35Q96QK1 AC016925.2-201ENST00000605108 242 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 FAM157A-202ENST00000615155 405 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 AL353997.5-201ENST00000618886 171 ntBASIC1.55□□□□□ -2.16
VPS35Q96QK1 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.55□□□□□ -2.16
VPS35Q96QK1 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
VPS35Q96QK1 ZNF72P-201ENST00000425869 1908 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 RNU6-562P-201ENST00000362731 107 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 RNU6-1286P-201ENST00000383871 107 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 MIR517C-201ENST00000385103 95 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
VPS35Q96QK1 RNA5SP494-201ENST00000410653 129 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 RNU6-325P-201ENST00000411132 105 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 RPS26P42-201ENST00000413485 326 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.54□□□□□ -2.16
VPS35Q96QK1 HMGB1P18-201ENST00000438801 619 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.54□□□□□ -2.16
VPS35Q96QK1 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
VPS35Q96QK1 ATP5J2P3-201ENST00000451550 258 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 AC112492.4-201ENST00000456549 352 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 AC087477.1-201ENST00000465747 340 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.54□□□□□ -2.16
VPS35Q96QK1 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.54□□□□□ -2.16
VPS35Q96QK1 RNU6-1332P-201ENST00000516666 104 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.54□□□□□ -2.16
VPS35Q96QK1 AL512360.1-201ENST00000555346 234 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.54□□□□□ -2.16
VPS35Q96QK1 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.54□□□□□ -2.16
VPS35Q96QK1 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 AC005562.2-201ENST00000618264 111 ntBASIC1.54□□□□□ -2.16
VPS35Q96QK1 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.54□□□□□ -2.16
VPS35Q96QK1 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
VPS35Q96QK1 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
VPS35Q96QK1 RNU6-545P-201ENST00000362681 104 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 Y_RNA.132-201ENST00000363421 102 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 RNU6-522P-201ENST00000364497 107 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 RNU6-338P-201ENST00000383888 105 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms