Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MTND5P2-201ENST00000442927 1142 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC0.18□□□□□ -2.38
USP54Q70EL1 OR8K2P-201ENST00000524645 927 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 AC008752.3-201ENST00000588113 712 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 AC012507.3-201ENST00000603556 477 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 AP002802.2-201ENST00000605877 235 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 AC092268.1-201ENST00000342691 405 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 RNU6-534P-201ENST00000364877 106 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 SNORA32.2-201ENST00000384049 122 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 RNU6-793P-201ENST00000384233 104 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 RNU6-43P-201ENST00000384302 107 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.18□□□□□ -2.38
USP54Q70EL1 AC067940.1-201ENST00000458411 300 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 RNU6-948P-201ENST00000516374 107 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC0.18□□□□□ -2.38
USP54Q70EL1 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.18□□□□□ -2.38
USP54Q70EL1 AC009712.1-201ENST00000564938 316 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 AC090517.1-201ENST00000569307 266 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 AL929325.1-201ENST00000603096 117 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 RNU6-545P-201ENST00000362681 104 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 U3.9-201ENST00000363823 204 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 SNORD89-201ENST00000390981 114 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 MIR1284-201ENST00000408337 120 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 C1DP2-201ENST00000418167 426 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 RPEP5-201ENST00000441137 268 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 C1DP4-201ENST00000455429 424 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 AC022493.2-201ENST00000506122 481 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.17□□□□□ -2.38
USP54Q70EL1 SCARNA1-201ENST00000517138 166 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 MTND2P7-201ENST00000521337 640 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.17□□□□□ -2.38
USP54Q70EL1 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.17□□□□□ -2.38
USP54Q70EL1 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.17□□□□□ -2.38
USP54Q70EL1 MIR4742-201ENST00000581069 85 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 DEFB131E-202ENST00000602581 683 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 AC092106.3-201ENST00000611308 722 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 AC068880.4-201ENST00000623082 495 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 U4.7-201ENST00000638126 106 ntBASIC0.17□□□□□ -2.38
USP54Q70EL1 RNU6-1067P-201ENST00000384752 107 ntBASIC0.16□□□□□ -2.38
USP54Q70EL1 RNA5SP467-201ENST00000391274 118 ntBASIC0.16□□□□□ -2.38
USP54Q70EL1 MIR1265-201ENST00000408444 86 ntBASIC0.16□□□□□ -2.38
USP54Q70EL1 RNU6-377P-201ENST00000515965 102 ntBASIC0.16□□□□□ -2.38
USP54Q70EL1 AC024995.1-201ENST00000523014 93 ntBASIC0.16□□□□□ -2.38
USP54Q70EL1 ZNF321P-202ENST00000550843 495 ntBASIC0.16□□□□□ -2.38
USP54Q70EL1 AC021231.3-201ENST00000558497 370 ntBASIC0.16□□□□□ -2.38
USP54Q70EL1 MTND3P13-201ENST00000574391 343 ntBASIC0.16□□□□□ -2.38
USP54Q70EL1 AL357075.2-201ENST00000614906 189 ntBASIC0.16□□□□□ -2.38
USP54Q70EL1 AC116165.2-201ENST00000616705 206 ntBASIC0.16□□□□□ -2.38
USP54Q70EL1 RNU6-877P-201ENST00000383868 107 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 RNU6-224P-201ENST00000384055 107 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 RNU6-1026P-201ENST00000384465 108 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 RNU6-45P-201ENST00000384471 107 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 RNU6-417P-201ENST00000384712 107 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 Y_RNA.578-201ENST00000390903 88 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 AC092809.3-201ENST00000415453 231 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 AC114491.1-201ENST00000416095 246 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
USP54Q70EL1 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC0.15□□□□□ -2.39
USP54Q70EL1 RNU7-34P-201ENST00000459394 64 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 RNU7-21P-201ENST00000459430 62 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.15□□□□□ -2.39
USP54Q70EL1 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.15□□□□□ -2.39
USP54Q70EL1 RNU1-142P-201ENST00000516682 145 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.15□□□□□ -2.39
USP54Q70EL1 MIR544B-201ENST00000582372 78 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC0.15□□□□□ -2.39
USP54Q70EL1 AL162424.1-201ENST00000602325 221 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 AC009509.4-201ENST00000619202 509 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 AL627230.5-201ENST00000619807 58 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 AC136475.10-201ENST00000620253 385 ntBASIC0.15□□□□□ -2.39
USP54Q70EL1 AL589826.1-201ENST00000340697 249 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 RNU6-1327P-201ENST00000365302 105 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 MTCO2P12-201ENST00000427426 682 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC0.14□□□□□ -2.39
USP54Q70EL1 AC022364.2-201ENST00000457963 554 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.14□□□□□ -2.39
USP54Q70EL1 AC090049.2-201ENST00000550377 109 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 AL357312.1-201ENST00000603879 298 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 AC072039.2-201ENST00000608883 439 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 AC106754.2-201ENST00000623006 233 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 RNY4P24-201ENST00000362735 96 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 RNU6-511P-201ENST00000363496 107 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC0.14□□□□□ -2.39
USP54Q70EL1 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.14□□□□□ -2.39
USP54Q70EL1 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
USP54Q70EL1 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.14□□□□□ -2.39
USP54Q70EL1 AP003049.1-201ENST00000529418 457 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 AP002453.2-201ENST00000533503 320 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 SNORA59B-202ENST00000578183 701 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 AC110760.3-201ENST00000598794 467 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 AL158032.1-201ENST00000605401 106 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 AC104073.3-201ENST00000610942 955 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC0.14□□□□□ -2.39
USP54Q70EL1 BX322639.1-202ENST00000423987 2213 ntBASIC0.14□□□□□ -2.39
USP54Q70EL1 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.13□□□□□ -2.39
USP54Q70EL1 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
USP54Q70EL1 RNU6-78P-201ENST00000362897 107 ntBASIC0.13□□□□□ -2.39
USP54Q70EL1 RNU6-723P-201ENST00000383973 107 ntBASIC0.13□□□□□ -2.39
USP54Q70EL1 RNU6-163P-201ENST00000384396 106 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms