Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC016256.1-201ENST00000547971 354 ntBASIC1.5□□□□□ -2.17
SHMT2P34897 AL157687.1-201ENST00000554853 619 ntBASIC1.5□□□□□ -2.17
SHMT2P34897 HMGB1P33-201ENST00000563485 527 ntBASIC1.5□□□□□ -2.17
SHMT2P34897 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.5□□□□□ -2.17
SHMT2P34897 AC080013.6-201ENST00000606185 215 ntBASIC1.5□□□□□ -2.17
SHMT2P34897 RNU6-89P-201ENST00000606519 100 ntBASIC1.5□□□□□ -2.17
SHMT2P34897 AL136221.1-201ENST00000621449 509 ntBASIC1.5□□□□□ -2.17
SHMT2P34897 AC130454.1-201ENST00000622948 401 ntBASIC1.5□□□□□ -2.17
SHMT2P34897 FER-210ENST00000628534 558 ntTSL 5 BASIC1.5□□□□□ -2.17
SHMT2P34897 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
SHMT2P34897 AP000648.3-201ENST00000623539 4507 ntBASIC1.5□□□□□ -2.17
SHMT2P34897 OR4G1P-203ENST00000641984 1631 ntBASIC1.5□□□□□ -2.17
SHMT2P34897 Y_RNA.41-201ENST00000362646 102 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 SNORA32.2-201ENST00000384049 122 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 RNA5SP212-201ENST00000391223 107 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.49□□□□□ -2.17
SHMT2P34897 RNU6-908P-201ENST00000410160 94 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 MTCO3P41-201ENST00000414801 328 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 MRPS10P2-201ENST00000431226 381 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 MTND1P1-201ENST00000445453 368 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.49□□□□□ -2.17
SHMT2P34897 snoU13.6-201ENST00000458785 104 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 RNU1-131P-201ENST00000458943 161 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 TOMM22P6-201ENST00000465035 409 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.49□□□□□ -2.17
SHMT2P34897 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.49□□□□□ -2.17
SHMT2P34897 AC092436.3-201ENST00000511788 257 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 RNVU1-2-201ENST00000516326 135 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 Y_RNA.704-201ENST00000516851 102 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 DEFB131C-201ENST00000528817 165 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.49□□□□□ -2.17
SHMT2P34897 MIR4285-201ENST00000581001 85 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.49□□□□□ -2.17
SHMT2P34897 MIR4713-201ENST00000582691 75 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 uc_338.5-201ENST00000611839 155 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 U1.36-201ENST00000620684 176 ntBASIC1.49□□□□□ -2.17
SHMT2P34897 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.49□□□□□ -2.17
SHMT2P34897 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.49□□□□□ -2.17
SHMT2P34897 CBX3P1-201ENST00000325243 554 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 RNU6-457P-201ENST00000363999 107 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 Y_RNA.372-201ENST00000365599 102 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
SHMT2P34897 ERLEC1P1-201ENST00000433806 578 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 HSPE1P21-201ENST00000438283 308 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.48□□□□□ -2.17
SHMT2P34897 SNRPEP8-201ENST00000442866 260 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 U8.21-201ENST00000459536 136 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 AC130509.1-201ENST00000464158 433 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 RPL9P9-202ENST00000466501 579 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 AC083904.1-201ENST00000487828 231 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.48□□□□□ -2.17
SHMT2P34897 Y_RNA.665-201ENST00000516177 98 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 RNU6-1281P-201ENST00000516223 105 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 RNU6-970P-201ENST00000516312 107 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 SNORA31.24-201ENST00000517232 57 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.48□□□□□ -2.17
SHMT2P34897 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.48□□□□□ -2.17
SHMT2P34897 AC090517.1-201ENST00000569307 266 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.48□□□□□ -2.17
SHMT2P34897 AL162413.1-201ENST00000603198 110 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 AC064807.4-201ENST00000607201 407 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 AC103810.8-201ENST00000607347 118 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 RMST_6.1-201ENST00000611980 203 ntBASIC1.48□□□□□ -2.17
SHMT2P34897 RNU5B-2P-201ENST00000363036 113 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 RNU6-60P-201ENST00000364792 103 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 RNU6-483P-201ENST00000384088 108 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 RNU6-325P-201ENST00000411132 105 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 AC139712.2-201ENST00000424302 339 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 AC016925.1-201ENST00000458303 298 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 RNU5F-4P-201ENST00000516581 114 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 RNU6-1332P-201ENST00000516666 104 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 GNAI2P1-201ENST00000541815 315 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 MIR3198-2-201ENST00000577868 80 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 AC100830.2-201ENST00000581636 240 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 AC010525.2-201ENST00000590920 195 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 AC004492.1-201ENST00000607036 742 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 AC104458.1-201ENST00000608243 463 ntBASIC1.47□□□□□ -2.17
SHMT2P34897 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SHMT2P34897 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.46□□□□□ -2.17
SHMT2P34897 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
SHMT2P34897 RNU6-451P-201ENST00000362921 107 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 SNORD31B-201ENST00000364977 69 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 SNORA29-201ENST00000384183 140 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 U8.10-201ENST00000384260 133 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 SNORA17.3-201ENST00000391159 129 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 MIR1323-201ENST00000408090 73 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 RNA5SP100-201ENST00000410903 110 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 RNA5SP59-201ENST00000410922 110 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 DLGAP5P1-201ENST00000430307 464 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 RNU7-14P-201ENST00000459331 62 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 RNA5SP57-201ENST00000459463 123 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 FO393415.2-201ENST00000480085 343 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 AC023790.1-201ENST00000482174 347 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 CPDP1-201ENST00000579660 283 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 MIR4303-201ENST00000581299 66 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 AC005786.1-201ENST00000588553 154 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.46□□□□□ -2.18
SHMT2P34897 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms