| STAG3L3 | P0CL85 | AC006041.1-201 | ENST00000425322 | 328 nt | TSL 3 BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RAB28P5-201 | ENST00000427490 | 651 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | PCDH9-AS1-201 | ENST00000430861 | 532 nt | TSL 2 BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AL033528.1-201 | ENST00000453780 | 140 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | snoU13.6-201 | ENST00000458785 | 104 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU7-167P-201 | ENST00000459160 | 62 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | LINC01491-201 | ENST00000558434 | 505 nt | TSL 3 BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC023043.2-201 | ENST00000589678 | 1026 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | Z99497.2-201 | ENST00000603634 | 310 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC073413.2-201 | ENST00000604332 | 360 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | TTK-211 | ENST00000627129 | 240 nt | TSL 5 BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AL133216.2-202 | ENST00000634512 | 349 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU6-606P-201 | ENST00000384721 | 111 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU6-1031P-201 | ENST00000384773 | 107 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | MIR549A-201 | ENST00000385268 | 96 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNA5SP109-201 | ENST00000391010 | 116 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RPS26P42-201 | ENST00000413485 | 326 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | CYCSP49-201 | ENST00000420810 | 319 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC011233.1-201 | ENST00000422812 | 283 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | LINC02264-201 | ENST00000442020 | 576 nt | TSL 3 BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC009237.7-201 | ENST00000447357 | 229 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | LINC00894-208 | ENST00000455777 | 284 nt | TSL 2 BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | CFLAR-AS1-202 | ENST00000474886 | 223 nt | TSL 3 BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC106038.2-201 | ENST00000520706 | 568 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC090503.1-201 | ENST00000548029 | 729 nt | TSL 3 BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | TPRKBP2-201 | ENST00000565969 | 475 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC016727.2-201 | ENST00000603988 | 621 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC011458.1-201 | ENST00000604034 | 617 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC211469.2-201 | ENST00000605461 | 205 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | U2.17-201 | ENST00000611454 | 95 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC006001.4-201 | ENST00000622243 | 395 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU4-79P-201 | ENST00000362764 | 141 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | Y_RNA.287-201 | ENST00000364853 | 94 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | SNORA40.3-201 | ENST00000390964 | 122 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RN7SKP200-201 | ENST00000410564 | 320 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AL445259.1-203 | ENST00000427828 | 251 nt | TSL 3 BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | SNORA31.2-201 | ENST00000516019 | 134 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU1-92P-201 | ENST00000517017 | 135 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC023200.1-201 | ENST00000519660 | 651 nt | TSL 3 BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AL442163.1-201 | ENST00000557251 | 515 nt | TSL 5 BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC090616.2-202 | ENST00000584248 | 222 nt | BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | ZNF415-224 | ENST00000601493 | 2132 nt | TSL 1 (best) BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC068631.1-220 | ENST00000630726 | 256 nt | TSL 5 BASIC | 0.87 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | ZNF260-205 | ENST00000593142 | 4047 nt | APPRIS P1 TSL 1 (best) BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | MT-ND2-201 | ENST00000361453 | 1042 nt | APPRIS P1 BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU4-91P-201 | ENST00000364778 | 135 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU6-456P-201 | ENST00000384493 | 107 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | SNORD12-201 | ENST00000391002 | 90 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU2-64P-201 | ENST00000411315 | 191 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AL512271.1-201 | ENST00000439878 | 434 nt | TSL 3 BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | MAMDC2-AS1-205 | ENST00000451488 | 317 nt | TSL 3 BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AL355314.1-201 | ENST00000453639 | 316 nt | TSL 5 BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | OFD1P4Y-201 | ENST00000455273 | 1179 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | SNRPFP3-201 | ENST00000457792 | 225 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC105417.1-201 | ENST00000514691 | 285 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC092436.2-201 | ENST00000515188 | 411 nt | TSL 2 BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | ACA64.5-201 | ENST00000516207 | 127 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU1-142P-201 | ENST00000516682 | 145 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC090023.1-201 | ENST00000545750 | 443 nt | TSL 3 BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC008088.1-201 | ENST00000580993 | 280 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC032019.2-201 | ENST00000584916 | 403 nt | TSL 5 BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC146944.4-201 | ENST00000602697 | 718 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AL513534.2-201 | ENST00000603836 | 250 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC103810.9-201 | ENST00000606688 | 112 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AP001596.2-201 | ENST00000608410 | 312 nt | BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | C9orf84-204 | ENST00000394777 | 4955 nt | APPRIS ALT2 TSL 1 (best) BASIC | 0.86 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | GAGE12B-201 | ENST00000361446 | 117 nt | APPRIS P1 BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU6-227P-201 | ENST00000362865 | 103 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | SNORD114-24-201 | ENST00000365029 | 72 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | MIR586-201 | ENST00000385035 | 97 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU6-910P-201 | ENST00000390844 | 107 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNA5SP467-201 | ENST00000391274 | 118 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | FGFR1OP2P1-201 | ENST00000395943 | 500 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC063976.4-201 | ENST00000421971 | 163 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | Z68323.1-201 | ENST00000450365 | 519 nt | TSL 3 BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RPS27P1-201 | ENST00000450552 | 247 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | SRRM1P2-201 | ENST00000464531 | 1192 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC116337.1-201 | ENST00000509680 | 687 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC010493.1-201 | ENST00000513479 | 292 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU1-41P-201 | ENST00000516161 | 162 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU1-48P-201 | ENST00000516400 | 162 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU6-612P-201 | ENST00000516909 | 102 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | MTND2P32-201 | ENST00000521584 | 1038 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AL137161.1-201 | ENST00000532231 | 390 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | BNIP3P22-201 | ENST00000593399 | 556 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | BNIP3P39-201 | ENST00000601077 | 554 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AP000907.4-201 | ENST00000604143 | 237 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC138058.1-201 | ENST00000620572 | 449 nt | TSL 3 BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | MIR6852-201 | ENST00000621699 | 66 nt | BASIC | 0.85 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | Y_RNA.560-201 | ENST00000384689 | 102 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC010154.1-201 | ENST00000425857 | 269 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | LINC02263-203 | ENST00000426240 | 515 nt | TSL 5 BASIC | 0.84 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AL354994.1-201 | ENST00000445967 | 194 nt | TSL 5 BASIC | 0.84 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC110009.1-201 | ENST00000512965 | 451 nt | TSL 5 BASIC | 0.84 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU6-1069P-201 | ENST00000516612 | 133 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | RNU6-323P-201 | ENST00000521915 | 107 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AP002963.1-201 | ENST00000530590 | 184 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC107882.1-201 | ENST00000530837 | 477 nt | TSL 3 BASIC | 0.84 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | MIR4513-201 | ENST00000581077 | 86 nt | BASIC | 0.84 | □□□□□ -2.27 | | |
| STAG3L3 | P0CL85 | AC068790.2-201 | ENST00000602601 | 557 nt | BASIC | 0.84 | □□□□□ -2.27 | | |