Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC098657.3-201ENST00000620434 263 ntBASIC2.04□□□□□ -2.08
PCDHGA1Q9Y5H4 AC090617.10-201ENST00000624308 134 ntBASIC2.04□□□□□ -2.08
PCDHGA1Q9Y5H4 MIR3662-201ENST00000637030 95 ntBASIC2.04□□□□□ -2.08
PCDHGA1Q9Y5H4 AP000553.5-201ENST00000641933 54 ntBASIC2.04□□□□□ -2.08
PCDHGA1Q9Y5H4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC009541.1-201ENST00000438279 2662 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 Y_RNA.4-201ENST00000362333 112 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 RNU6-1252P-201ENST00000363054 104 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 SNORD32B-201ENST00000364460 84 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 Y_RNA.414-201ENST00000384011 101 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 MIR676-201ENST00000390702 67 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 RNA5SP201-201ENST00000410316 124 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 RNU6-325P-201ENST00000411132 105 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC096920.1-201ENST00000423991 241 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 USP9YP28-201ENST00000435142 589 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 MTCO1P29-201ENST00000496868 288 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC021231.3-201ENST00000558497 370 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 MIR4299-201ENST00000577899 72 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC078795.3-201ENST00000602913 472 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AL022345.1-201ENST00000607292 135 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AL138726.1-201ENST00000614873 333 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 AC002553.4-201ENST00000616896 331 ntBASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
PCDHGA1Q9Y5H4 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 Y_RNA.140-201ENST00000363474 103 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 Y_RNA.157-201ENST00000363638 102 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 Y_RNA.505-201ENST00000384489 102 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 RPL23AP36-201ENST00000413895 458 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 AL513185.2-201ENST00000425543 193 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 MTND3P9-201ENST00000429526 346 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 MTCO3P18-201ENST00000440206 761 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 AC096745.1-201ENST00000509945 370 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-965P-201ENST00000516721 96 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-256P-201ENST00000516747 97 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 AC016256.1-201ENST00000547971 354 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 MIR4498-201ENST00000577599 66 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 MIR3672-201ENST00000584290 82 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 AP000907.4-201ENST00000604143 237 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 RPL17P51-201ENST00000605218 238 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 AL773524.1-201ENST00000614065 229 ntBASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
PCDHGA1Q9Y5H4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 RNA5SP276-201ENST00000362580 94 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU1-17P-201ENST00000363022 152 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 SNORA36A-201ENST00000384221 132 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU2-2P-201ENST00000410396 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 EIF1AXP1-201ENST00000419267 435 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 AC108729.3-201ENST00000513484 108 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 CYP4A27P-201ENST00000567218 190 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 Z98751.3-201ENST00000604447 521 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 MIR8076-201ENST00000611401 83 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.15-201ENST00000611544 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 RMST_6.1-201ENST00000611980 203 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.16-201ENST00000613119 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 PCGEM1.1-201ENST00000613431 131 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.12-201ENST00000613778 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.20-201ENST00000613956 192 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.9-201ENST00000615427 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.11-201ENST00000616345 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.2-201ENST00000616535 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.3-201ENST00000617785 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.19-201ENST00000618602 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU2-1-201ENST00000618664 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.6-201ENST00000619225 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.5-201ENST00000619465 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 U2.10-201ENST00000620268 191 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 MIR1248-201ENST00000629190 106 ntBASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
PCDHGA1Q9Y5H4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU1-58P-201ENST00000362413 163 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 Y_RNA.135-201ENST00000363439 95 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-26P-201ENST00000383985 107 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU11-3P-201ENST00000391111 133 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 SNORA12-201ENST00000391162 147 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms