Protein–RNA interactions for Protein: Q9XRX5

HHLA3, HERV-H LTR-associating protein 3, humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HHLA3Q9XRX5 BNIP3P10-201ENST00000605360 577 ntBASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 AC002044.1-201ENST00000606707 158 ntBASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 AC004492.1-201ENST00000607036 742 ntBASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 7SK.8-201ENST00000612110 250 ntBASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 AC008250.2-201ENST00000615261 205 ntBASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 7SK.11-201ENST00000615477 250 ntBASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 7SK.13-201ENST00000622040 250 ntBASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 AC022418.1-201ENST00000624118 445 ntBASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 MIR338-201ENST00000636369 67 ntBASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 AC099654.5-201ENST00000636479 350 ntBASIC0.68□□□□□ -2.3
HHLA3Q9XRX5 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RNA5SP432-201ENST00000362480 116 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RNY1P10-201ENST00000363268 113 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RNU1-22P-201ENST00000363334 158 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RNU6-1214P-201ENST00000363650 109 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RNU1-124P-201ENST00000363861 145 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RNY4P34-201ENST00000364779 95 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RNU6-1029P-201ENST00000384109 107 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RNU6-393P-201ENST00000384475 107 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 MIR454-201ENST00000390180 115 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 SNORA16.2-201ENST00000390991 127 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RNU6-321P-201ENST00000410912 106 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AC002486.1-201ENST00000435098 391 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AC069257.2-201ENST00000441819 155 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AC079382.1-201ENST00000493346 557 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AL163195.1-201ENST00000496941 348 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AK3P2-201ENST00000507976 429 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RNU2-69P-201ENST00000516061 100 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 SNORD116-28-201ENST00000516123 91 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 SNORD27.1-201ENST00000516319 72 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RNA5SP503-201ENST00000517047 117 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 TMF1P1-201ENST00000576058 373 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AP001836.1-201ENST00000604675 523 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 RPL17P51-201ENST00000605218 238 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AL353149.1-201ENST00000610667 244 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 AC068647.2-201ENST00000637380 353 ntBASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
HHLA3Q9XRX5 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 SNORA18.2-201ENST00000383865 132 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 RNU6-968P-201ENST00000384076 107 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 SNORA25-201ENST00000384384 134 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 RNU6-925P-201ENST00000384629 104 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 MIR1-2-201ENST00000384961 85 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 SNORD70.1-201ENST00000391007 85 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 RPS3AP3-201ENST00000411933 242 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 COX6CP10-201ENST00000416832 224 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 AC011233.1-201ENST00000422812 283 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 AC012306.1-201ENST00000423267 114 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 GPR143P-201ENST00000434155 205 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 AC244505.5-201ENST00000443639 207 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 PGBD4P5-201ENST00000445958 426 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 RPS29P15-201ENST00000458329 171 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 RNU7-182P-201ENST00000459009 62 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 MTND2P14-201ENST00000482139 351 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 RNU6-165P-201ENST00000517170 99 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 AP003072.2-201ENST00000527756 676 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 AC136932.1-201ENST00000574771 208 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 MIR4709-201ENST00000577272 72 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 AL022345.2-201ENST00000606307 135 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 BX284668.6-201ENST00000606899 438 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 AC040896.1-201ENST00000613819 479 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 BX322639.1-202ENST00000423987 2213 ntBASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.66□□□□□ -2.3
HHLA3Q9XRX5 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 RNU6-534P-201ENST00000364877 106 ntBASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 RNA5SP259-201ENST00000365541 109 ntBASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 Y_RNA.480-201ENST00000384364 102 ntBASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 RNU6-434P-201ENST00000384376 107 ntBASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 RNU6-1127P-201ENST00000384580 107 ntBASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 MIR146A-201ENST00000385201 99 ntBASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 RNU4-46P-201ENST00000410818 138 ntBASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 AP000275.1-201ENST00000411943 390 ntBASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 AC009961.2-201ENST00000435771 251 ntBASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 AC079781.2-201ENST00000446424 169 ntBASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 RPS27P1-201ENST00000450552 247 ntBASIC0.65□□□□□ -2.31
HHLA3Q9XRX5 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms