Protein–RNA interactions for Protein: Q9H321

VCX3B, Variable charge X-linked protein 3B, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3BQ9H321 RNU7-34P-201ENST00000459394 64 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.64□□□□□ -2.31
VCX3BQ9H321 AC079382.1-201ENST00000493346 557 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 RPS23P5-201ENST00000495419 428 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 AK3P2-201ENST00000507976 429 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 AC067942.3-201ENST00000512025 362 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
VCX3BQ9H321 RNU2-34P-201ENST00000516534 121 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 RNA5SP384-201ENST00000516615 116 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 RNU6-165P-201ENST00000517170 99 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 SNORA25.17-201ENST00000517184 124 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.64□□□□□ -2.31
VCX3BQ9H321 AP003461.1-201ENST00000528866 78 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 AC103996.1-201ENST00000555468 102 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.64□□□□□ -2.31
VCX3BQ9H321 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.64□□□□□ -2.31
VCX3BQ9H321 MIR4742-201ENST00000581069 85 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 MIR4775-201ENST00000581168 75 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 AC098848.2-201ENST00000588023 330 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 AL022161.1-201ENST00000604390 213 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 AP001836.1-201ENST00000604675 523 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.64□□□□□ -2.31
VCX3BQ9H321 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.64□□□□□ -2.31
VCX3BQ9H321 AL136221.1-201ENST00000621449 509 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 AC068647.2-201ENST00000637380 353 ntBASIC0.64□□□□□ -2.31
VCX3BQ9H321 BX322639.1-202ENST00000423987 2213 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 RNU6-545P-201ENST00000362681 104 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 RNU1-17P-201ENST00000363022 152 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 RNU6-457P-201ENST00000363999 107 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 SNORD114-24-201ENST00000365029 72 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 RNA5SP126-201ENST00000365092 109 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 SNORA18.2-201ENST00000383865 132 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 RNU6-418P-201ENST00000384035 107 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 RNU6-1029P-201ENST00000384109 107 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 RNU6-925P-201ENST00000384629 104 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.63□□□□□ -2.31
VCX3BQ9H321 UBE2D3P4-201ENST00000441973 436 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.63□□□□□ -2.31
VCX3BQ9H321 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.63□□□□□ -2.31
VCX3BQ9H321 C1DP4-201ENST00000455429 424 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 RPS26P45-201ENST00000471748 340 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.63□□□□□ -2.31
VCX3BQ9H321 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.63□□□□□ -2.31
VCX3BQ9H321 AC008628.2-201ENST00000502605 298 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 LRRC34P2-201ENST00000514850 553 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 RNU2-69P-201ENST00000516061 100 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 AC025811.1-201ENST00000604312 472 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 AC002044.1-201ENST00000606707 158 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 AC064807.4-201ENST00000607201 407 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 AC004223.4-201ENST00000612426 332 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 AC022306.3-201ENST00000619930 550 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 MIR338-201ENST00000636369 67 ntBASIC0.63□□□□□ -2.31
VCX3BQ9H321 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
VCX3BQ9H321 RNU6-1123P-201ENST00000362347 106 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 RNU6-266P-201ENST00000364225 107 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 RNU6-393P-201ENST00000384475 107 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 MIR92A1-201ENST00000385233 78 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 SNORA16.2-201ENST00000390991 127 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 MIR1283-1-201ENST00000408494 87 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.62□□□□□ -2.31
VCX3BQ9H321 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.62□□□□□ -2.31
VCX3BQ9H321 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.62□□□□□ -2.31
VCX3BQ9H321 OOSP1P1-201ENST00000423265 274 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 AC010099.3-201ENST00000423896 409 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC0.62□□□□□ -2.31
VCX3BQ9H321 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.62□□□□□ -2.31
VCX3BQ9H321 RPS29P15-201ENST00000458329 171 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 RNU7-182P-201ENST00000459009 62 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 RNU7-95P-201ENST00000459222 64 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.62□□□□□ -2.31
VCX3BQ9H321 SNORA70.22-201ENST00000517160 124 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC0.62□□□□□ -2.31
VCX3BQ9H321 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.62□□□□□ -2.31
VCX3BQ9H321 MIR4698-201ENST00000577795 80 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 MIR548AB-201ENST00000584917 84 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 uc_338.17-201ENST00000619633 179 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 SEPT14P19-203ENST00000633205 211 ntBASIC0.62□□□□□ -2.31
VCX3BQ9H321 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC0.62□□□□□ -2.31
VCX3BQ9H321 RNU6-562P-201ENST00000362731 107 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 snoU2-30.2-201ENST00000362805 70 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 RNY4P34-201ENST00000364779 95 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 RNA5SP259-201ENST00000365541 109 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 RNU6-108P-201ENST00000365558 107 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 RNU6-434P-201ENST00000384376 107 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 RNU6-1127P-201ENST00000384580 107 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 MIR300-201ENST00000401138 83 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 RNU6-195P-201ENST00000411352 109 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 RPS3AP3-201ENST00000411933 242 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 AP000275.1-201ENST00000411943 390 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.61□□□□□ -2.31
VCX3BQ9H321 AC012306.1-201ENST00000423267 114 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.61□□□□□ -2.31
VCX3BQ9H321 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.61□□□□□ -2.31
VCX3BQ9H321 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC0.61□□□□□ -2.31
VCX3BQ9H321 RPS27P22-201ENST00000478056 241 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 AC117454.1-201ENST00000491120 168 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 AC010486.2-201ENST00000505572 483 ntBASIC0.61□□□□□ -2.31
VCX3BQ9H321 MRPS36P3-201ENST00000519284 130 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms