Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 MTCO2P7-201ENST00000446518 666 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 AL360271.2-201ENST00000447710 161 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 AC013470.1-201ENST00000453438 462 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 SNORD60.2-201ENST00000516883 86 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 AC090888.2-201ENST00000559765 1144 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.38□□□□□ -2.35
CHD3Q12873 AC104458.1-201ENST00000608243 463 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 AC026585.1-201ENST00000619582 524 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.38□□□□□ -2.35
CHD3Q12873 RNU4-48P-201ENST00000365559 182 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 MTCYBP2-201ENST00000407745 171 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 MIR1283-1-201ENST00000408494 87 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AC123900.1-201ENST00000420390 96 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AL354692.1-201ENST00000423044 315 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 EEF1A1P39-201ENST00000440791 250 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 RPS27AP8-201ENST00000452665 445 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AL157398.1-201ENST00000452981 186 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 snoU109.3-201ENST00000459477 145 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC0.37□□□□□ -2.35
CHD3Q12873 RNA5SP285-201ENST00000516619 119 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.37□□□□□ -2.35
CHD3Q12873 AC123904.2-201ENST00000548059 300 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.37□□□□□ -2.35
CHD3Q12873 MIR4709-201ENST00000577272 72 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AC009994.1-201ENST00000606889 253 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AC021506.2-201ENST00000612354 169 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AC093913.1-201ENST00000614178 329 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AL627230.5-201ENST00000619807 58 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 MIR340-201ENST00000362125 95 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 RNA5SP327-201ENST00000362494 101 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 RNU6-371P-201ENST00000364283 108 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 Y_RNA.480-201ENST00000384364 102 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AC114482.1-201ENST00000418010 247 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AC063976.4-201ENST00000421971 163 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AC010099.3-201ENST00000423896 409 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AL606517.2-201ENST00000442855 241 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 RPL39P38-201ENST00000467018 153 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AC105758.1-201ENST00000506038 399 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 RNU1-86P-201ENST00000516108 154 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 RNU1-107P-201ENST00000516617 154 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 RNU6-201P-201ENST00000517100 61 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AC011979.2-201ENST00000527568 352 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AP003327.1-201ENST00000529684 127 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AC087883.1-201ENST00000551882 391 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 AC024940.5-201ENST00000622889 474 ntBASIC0.37□□□□□ -2.35
CHD3Q12873 MIR942-201ENST00000401111 86 ntBASIC0.36□□□□□ -2.35
CHD3Q12873 AL136310.1-201ENST00000404926 654 ntBASIC0.36□□□□□ -2.35
CHD3Q12873 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.36□□□□□ -2.35
CHD3Q12873 AC010486.2-201ENST00000505572 483 ntBASIC0.36□□□□□ -2.35
CHD3Q12873 AC022868.1-201ENST00000517767 391 ntBASIC0.36□□□□□ -2.35
CHD3Q12873 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC0.36□□□□□ -2.35
CHD3Q12873 MIR5589-201ENST00000579442 60 ntBASIC0.36□□□□□ -2.35
CHD3Q12873 AC008088.1-201ENST00000580993 280 ntBASIC0.36□□□□□ -2.35
CHD3Q12873 AC146944.4-201ENST00000602697 718 ntBASIC0.36□□□□□ -2.35
CHD3Q12873 AL034555.1-201ENST00000604816 211 ntBASIC0.36□□□□□ -2.35
CHD3Q12873 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.36□□□□□ -2.35
CHD3Q12873 AC144521.1-201ENST00000607148 956 ntBASIC0.36□□□□□ -2.35
CHD3Q12873 SNORD32A-201ENST00000364805 84 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 RNU6-384P-201ENST00000364900 104 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 SNORD116.1-201ENST00000365628 92 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 SNORA50A-201ENST00000384225 134 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 RNU6-298P-201ENST00000390888 96 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 SNORD89-201ENST00000390981 114 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 Z99497.1-201ENST00000421282 135 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.35□□□□□ -2.35
CHD3Q12873 AC244023.1-201ENST00000426884 112 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 USP9YP14-201ENST00000430663 563 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.35□□□□□ -2.35
CHD3Q12873 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC0.35□□□□□ -2.35
CHD3Q12873 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.35□□□□□ -2.35
CHD3Q12873 RNU7-34P-201ENST00000459394 64 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 AL590705.4-201ENST00000532209 134 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 AC023050.2-201ENST00000544968 387 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 MTND4LP25-201ENST00000570218 163 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 MIR4514-201ENST00000581410 57 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 AC008752.3-201ENST00000588113 712 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 AL513534.2-201ENST00000603836 250 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 AC242498.1-201ENST00000604134 111 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.35□□□□□ -2.35
CHD3Q12873 AC243994.1-201ENST00000618627 109 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 AL031667.3-201ENST00000620124 655 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.35□□□□□ -2.35
CHD3Q12873 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC0.35□□□□□ -2.35
CHD3Q12873 RNU6-534P-201ENST00000364877 106 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 AL139824.2-201ENST00000458731 1095 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 SRRM1P2-201ENST00000464531 1192 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 ACA64.5-201ENST00000516207 127 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 Z83818.1-201ENST00000603584 150 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 AC105148.1-201ENST00000604961 409 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 BX284668.6-201ENST00000606899 438 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 MIR8054-201ENST00000620877 86 ntBASIC0.35□□□□□ -2.35
CHD3Q12873 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.34□□□□□ -2.35
CHD3Q12873 AL391994.1-201ENST00000254724 282 ntBASIC0.34□□□□□ -2.36
CHD3Q12873 Y_RNA.97-201ENST00000363094 102 ntBASIC0.34□□□□□ -2.36
CHD3Q12873 RNA5SP259-201ENST00000365541 109 ntBASIC0.34□□□□□ -2.36
CHD3Q12873 RNU6-1179P-201ENST00000384667 107 ntBASIC0.34□□□□□ -2.36
CHD3Q12873 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
CHD3Q12873 AL031313.1-201ENST00000448435 256 ntBASIC0.34□□□□□ -2.36
CHD3Q12873 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.34□□□□□ -2.36
CHD3Q12873 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms