Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 MIR548B-201ENST00000385247 97 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 SNORA12.1-201ENST00000390873 148 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 AL079342.2-201ENST00000403367 482 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 Y_RNA.597-201ENST00000410463 100 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.03□□□□□ -2.41
COL7A1Q02388 AC007919.1-201ENST00000429380 217 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.03□□□□□ -2.41
COL7A1Q02388 ART2BP-201ENST00000453501 499 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 RNU7-136P-201ENST00000458819 69 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 MTND1P3-201ENST00000484956 952 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 NDUFA4P2-201ENST00000489989 244 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.03□□□□□ -2.41
COL7A1Q02388 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC0.03□□□□□ -2.41
COL7A1Q02388 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC0.03□□□□□ -2.41
COL7A1Q02388 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.03□□□□□ -2.41
COL7A1Q02388 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.03□□□□□ -2.41
COL7A1Q02388 RNU6-927P-201ENST00000516199 100 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 RNU6-914P-201ENST00000516749 109 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 AC024405.2-202ENST00000532731 184 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.03□□□□□ -2.41
COL7A1Q02388 AC090502.2-201ENST00000549267 280 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 AC027288.2-201ENST00000553028 243 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 AL133153.1-201ENST00000557756 303 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 TPRKBP2-201ENST00000565969 475 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 MIR3169-201ENST00000578032 83 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 AC115989.2-201ENST00000578640 563 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 AC110760.3-201ENST00000598794 467 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 BNIP3P30-201ENST00000601184 574 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 MIR8064-201ENST00000612863 90 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC0.03□□□□□ -2.41
COL7A1Q02388 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC0.02□□□□□ -2.41
COL7A1Q02388 MIR340-201ENST00000362125 95 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 snoZ40.1-201ENST00000364540 72 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 SNORD1A-201ENST00000364968 72 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 SNORA75B-201ENST00000384053 137 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 RNU6-140P-201ENST00000384566 108 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 SNORD116-23-201ENST00000384645 92 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 Y_RNA.551-201ENST00000384661 102 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 MIR186-201ENST00000384988 86 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 MIR520G-201ENST00000385064 90 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 MIR520H-201ENST00000385126 88 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 SNORD105-201ENST00000386910 85 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 RNU6-278P-201ENST00000390945 109 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 RNU6-750P-201ENST00000390946 107 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 MTATP6P27-201ENST00000416987 621 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 SNX2P2-201ENST00000424553 323 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 MTCO3P18-201ENST00000440206 761 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AL031313.1-201ENST00000448435 256 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 FABP5P15-201ENST00000453566 214 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC233266.1-201ENST00000454518 96 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC245047.8-201ENST00000456455 284 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 RNU7-159P-201ENST00000459284 62 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC130509.1-201ENST00000464158 433 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AP000797.1-201ENST00000478870 387 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AC024589.1-201ENST00000512207 263 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC0.02□□□□□ -2.41
COL7A1Q02388 SNORD79.1-201ENST00000516069 84 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AC090572.1-201ENST00000519251 160 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AC007751.1-201ENST00000529260 376 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 BNIP3P6-201ENST00000549284 499 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AL512310.8-201ENST00000550183 120 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC004584.2-201ENST00000570407 410 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AC060771.1-201ENST00000582031 164 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AC080078.2-201ENST00000603766 501 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 DPPA3P3-201ENST00000603842 430 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AL445435.1-201ENST00000604232 665 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 Z98751.3-201ENST00000604447 521 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AC097065.2-201ENST00000608159 533 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.02□□□□□ -2.41
COL7A1Q02388 AC242852.1-201ENST00000612151 96 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 MIR8054-201ENST00000620877 86 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC068880.4-201ENST00000623082 495 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AL162376.1-201ENST00000624117 175 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 SCARNA4-202ENST00000625402 129 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC009950.2-201ENST00000636548 183 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.02□□□□□ -2.41
COL7A1Q02388 CDR1-202ENST00000625883 1485 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.02□□□□□ -2.41
COL7A1Q02388 BX322639.1-202ENST00000423987 2213 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 RNU6-28P-201ENST00000362378 107 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 RNU4-79P-201ENST00000362764 141 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 RNU6-223P-201ENST00000362830 107 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 RNU1-76P-201ENST00000362903 159 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 SNORD114-11-201ENST00000363738 75 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 RNU6-726P-201ENST00000364680 107 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms