Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC-0.38□□□□□ -2.47
CUX1P39880 OFD1P4Y-201ENST00000455273 1179 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC-0.38□□□□□ -2.47
CUX1P39880 SUB1P2-201ENST00000556401 297 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 AC080078.2-201ENST00000603766 501 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 AL390208.1-201ENST00000605885 644 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 MTND5P32-201ENST00000560711 1802 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 SNORD105-201ENST00000386910 85 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC-0.38□□□□□ -2.47
CUX1P39880 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC-0.38□□□□□ -2.47
CUX1P39880 AC243964.1-201ENST00000441814 261 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC-0.38□□□□□ -2.47
CUX1P39880 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC-0.38□□□□□ -2.47
CUX1P39880 OFD1P7Y-201ENST00000454643 1155 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 snoU13.8-201ENST00000458890 104 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 AC027419.1-201ENST00000522976 328 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 AC025678.1-201ENST00000567861 338 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 AC023824.3-201ENST00000569003 562 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 RPL23AP91-201ENST00000569211 455 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 BNIP3P9-201ENST00000603714 553 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC-0.38□□□□□ -2.47
CUX1P39880 AC008147.4-201ENST00000617570 1204 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 AC092634.7-201ENST00000621022 103 ntBASIC-0.38□□□□□ -2.47
CUX1P39880 ZNF736P9Y-201ENST00000439586 1345 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC-0.39□□□□□ -2.47
CUX1P39880 SNORA32.3-201ENST00000384772 121 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 SNORA40C-201ENST00000391285 128 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 ZNF736P10Y-201ENST00000403990 1110 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 AL034345.1-201ENST00000407768 123 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 TPMTP2-201ENST00000414372 726 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 MTCYBP10-201ENST00000424905 650 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 DPRXP1-201ENST00000426312 460 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 snoU13.21-201ENST00000459368 105 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 AC026410.2-201ENST00000460281 156 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 AC091163.3-201ENST00000518269 1144 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 AC007751.1-201ENST00000529260 376 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 AC090049.2-201ENST00000550377 109 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 DPPA3P3-201ENST00000603842 430 ntBASIC-0.39□□□□□ -2.47
CUX1P39880 TTK-211ENST00000627129 240 ntTSL 5 BASIC-0.39□□□□□ -2.47
CUX1P39880 MIR103A2-201ENST00000362154 78 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 Y_RNA.330-201ENST00000365230 109 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC-0.4□□□□□ -2.47
CUX1P39880 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 AC013262.1-201ENST00000426710 252 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 SEPT7P5-201ENST00000434048 306 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 SEPT7P4-201ENST00000437076 306 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 AL606517.1-201ENST00000446914 387 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 RPL39P6-201ENST00000448289 150 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 AC104136.1-201ENST00000512969 394 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 RNU1-86P-201ENST00000516108 154 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 RNU1-107P-201ENST00000516617 154 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC-0.4□□□□□ -2.47
CUX1P39880 AC131055.1-201ENST00000584626 316 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 AC090617.9-201ENST00000623751 147 ntBASIC-0.4□□□□□ -2.47
CUX1P39880 RNU6-534P-201ENST00000364877 106 ntBASIC-0.41□□□□□ -2.48
CUX1P39880 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC-0.41□□□□□ -2.48
CUX1P39880 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC-0.41□□□□□ -2.48
CUX1P39880 STAG3L5P-204ENST00000443759 179 ntBASIC-0.41□□□□□ -2.48
CUX1P39880 AC003071.1-201ENST00000451219 789 ntBASIC-0.41□□□□□ -2.48
CUX1P39880 Y_RNA.644-201ENST00000459006 113 ntBASIC-0.41□□□□□ -2.48
CUX1P39880 AP000797.1-201ENST00000478870 387 ntBASIC-0.41□□□□□ -2.48
CUX1P39880 MTND2P33-201ENST00000506452 1031 ntBASIC-0.41□□□□□ -2.48
CUX1P39880 AC112693.2-201ENST00000556538 232 ntBASIC-0.41□□□□□ -2.48
CUX1P39880 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC-0.41□□□□□ -2.48
CUX1P39880 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC-0.41□□□□□ -2.48
CUX1P39880 AL356094.1-201ENST00000624663 1212 ntBASIC-0.41□□□□□ -2.48
CUX1P39880 AC099654.9-201ENST00000637055 678 ntBASIC-0.41□□□□□ -2.48
CUX1P39880 RNU4-63P-201ENST00000411313 118 ntBASIC-0.42□□□□□ -2.48
CUX1P39880 BTF3L4P1-201ENST00000413813 468 ntBASIC-0.42□□□□□ -2.48
CUX1P39880 AL139396.1-201ENST00000421137 167 ntBASIC-0.42□□□□□ -2.48
CUX1P39880 RPL7P55-201ENST00000450522 746 ntBASIC-0.42□□□□□ -2.48
CUX1P39880 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC-0.42□□□□□ -2.48
CUX1P39880 OR9P1P-201ENST00000496431 281 ntBASIC-0.42□□□□□ -2.48
CUX1P39880 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC-0.42□□□□□ -2.48
CUX1P39880 SNORA31.3-201ENST00000516029 96 ntBASIC-0.42□□□□□ -2.48
CUX1P39880 RNU5F-2P-201ENST00000516066 82 ntBASIC-0.42□□□□□ -2.48
CUX1P39880 RNU6-1041P-201ENST00000516254 102 ntBASIC-0.42□□□□□ -2.48
CUX1P39880 IGKV1-22-201ENST00000524313 326 ntBASIC-0.42□□□□□ -2.48
CUX1P39880 MIR4637-201ENST00000582405 84 ntBASIC-0.42□□□□□ -2.48
CUX1P39880 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC-0.43□□□□□ -2.48
CUX1P39880 RNU6-166P-201ENST00000384371 107 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 MIR610-201ENST00000385139 96 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 SNORA12.2-201ENST00000391040 156 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AC027644.1-201ENST00000419595 298 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 MTCYBP5-201ENST00000423752 1135 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 BX119904.4-201ENST00000424402 301 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC-0.43□□□□□ -2.48
CUX1P39880 MTCO2P18-201ENST00000457151 658 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC-0.43□□□□□ -2.48
CUX1P39880 RPL39P36-201ENST00000490784 156 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AC114811.1-201ENST00000507207 168 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 SNORA70.12-201ENST00000516084 153 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 MTND2P7-201ENST00000521337 640 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 ZNF519P3-201ENST00000557158 1032 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AC023827.1-201ENST00000569247 97 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AL929325.1-201ENST00000603096 117 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AC004987.4-201ENST00000603383 338 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC-0.43□□□□□ -2.48
CUX1P39880 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 SNORD32B-201ENST00000364460 84 ntBASIC-0.43□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 453.4 ms