Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU6-1245P-201ENST00000411130 106 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AP000275.1-201ENST00000411943 390 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.05□□□□□ -2.08
HOXD4P09016 AC236972.2-201ENST00000434979 310 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.05□□□□□ -2.08
HOXD4P09016 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.05□□□□□ -2.08
HOXD4P09016 AC124916.1-201ENST00000444020 547 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 UBE2V1P7-201ENST00000446395 340 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.05□□□□□ -2.08
HOXD4P09016 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.05□□□□□ -2.08
HOXD4P09016 MTCO3P10-201ENST00000455912 772 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.05□□□□□ -2.08
HOXD4P09016 AC104435.1-201ENST00000483483 166 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 RPL22P13-201ENST00000493291 347 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.05□□□□□ -2.08
HOXD4P09016 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 RNU5B-3P-201ENST00000516601 115 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.05□□□□□ -2.08
HOXD4P09016 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.05□□□□□ -2.08
HOXD4P09016 AC105245.1-201ENST00000581934 244 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 RPS15AP11-201ENST00000594193 385 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AC018889.1-201ENST00000605372 397 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AL133255.1-201ENST00000606374 441 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 MIR8076-201ENST00000611401 83 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AC084781.2-201ENST00000615568 161 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.05□□□□□ -2.08
HOXD4P09016 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 MIR6132-201ENST00000622083 109 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 MIRLET7G-201ENST00000362280 84 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 SNORD32A-201ENST00000364805 84 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 RNA5SP37-201ENST00000365420 130 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 Y_RNA.394-201ENST00000383942 103 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 RNU6-43P-201ENST00000384302 107 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 RNU6-174P-201ENST00000410406 106 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXD4P09016 MTCO2P27-201ENST00000420740 428 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 ZNF72P-201ENST00000425869 1908 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 RPL30P4-201ENST00000429309 333 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXD4P09016 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
HOXD4P09016 RPL30P15-201ENST00000457129 321 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXD4P09016 Y_RNA.653-201ENST00000459091 95 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 RPL30P12-201ENST00000474666 353 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 FO393415.2-201ENST00000480085 343 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXD4P09016 AC114801.2-201ENST00000503825 781 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 HMGN1P13-201ENST00000505795 138 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 AC091874.1-201ENST00000511402 339 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 ACA59.1-201ENST00000515966 143 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 RNU6-991P-201ENST00000516168 107 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 RNA5SP200-201ENST00000516360 103 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 RNA5SP384-201ENST00000516615 116 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXD4P09016 MIR5690-201ENST00000583739 73 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 AC078795.3-201ENST00000602913 472 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 PISRT1.1-201ENST00000616930 107 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 AC126177.8-201ENST00000618339 1015 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 AC090574.1-201ENST00000623186 233 ntBASIC2.04□□□□□ -2.08
HOXD4P09016 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.04□□□□□ -2.08
HOXD4P09016 Y_RNA.2-201ENST00000362330 96 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 Y_RNA.123-201ENST00000363338 102 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 RNU1-51P-201ENST00000365345 176 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 Y_RNA.460-201ENST00000384255 102 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 RNU6-331P-201ENST00000384724 107 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 MIR218-1-201ENST00000384999 110 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
HOXD4P09016 RNA5SP390-201ENST00000410191 113 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 RPS20P15-201ENST00000412792 311 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 MTND4P28-201ENST00000426217 387 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXD4P09016 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXD4P09016 RNU7-152P-201ENST00000458982 64 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 AC090515.1-201ENST00000465295 476 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 SNRPGP7-201ENST00000469016 106 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXD4P09016 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXD4P09016 AC009127.3-201ENST00000570531 403 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXD4P09016 RNU6-91P-201ENST00000607774 107 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 AL160413.1-201ENST00000622780 310 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 MIR219B-201ENST00000637023 88 ntBASIC2.03□□□□□ -2.08
HOXD4P09016 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
HOXD4P09016 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.03□□□□□ -2.08
HOXD4P09016 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
HOXD4P09016 AC009541.1-201ENST00000438279 2662 ntBASIC2.03□□□□□ -2.09
HOXD4P09016 AC002543.1-201ENST00000299783 1954 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 SNORD50.1-201ENST00000362987 71 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 RNU6-596P-201ENST00000365395 98 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 RNU6-890P-201ENST00000384121 107 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 RNU1-52P-201ENST00000384190 164 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 Y_RNA.579-201ENST00000390939 94 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 SNORA48.3-201ENST00000391081 134 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 BTF3L4P2-201ENST00000392798 346 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 U3.40-201ENST00000408706 208 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 RNA5SP338-201ENST00000410495 85 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXD4P09016 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms