Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL603839.4-201ENST00000624658 1005 ntBASIC-0.65□□□□□ -2.51
CCDC88BA6NC98 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC-0.65□□□□□ -2.51
CCDC88BA6NC98 MTND5P32-201ENST00000560711 1802 ntBASIC-0.65□□□□□ -2.51
CCDC88BA6NC98 RNY4P24-201ENST00000362735 96 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 SNORA18.1-201ENST00000363418 128 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 RNU6-843P-201ENST00000384454 104 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 SNORD83.1-201ENST00000411362 77 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 MTCO1P19-201ENST00000443487 500 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 LAMTOR3P2-201ENST00000504479 232 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 RNU5F-2P-201ENST00000516066 82 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 AP002001.1-203ENST00000534002 267 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 MIR4742-201ENST00000581069 85 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 AC005176.2-201ENST00000596933 147 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 BNIP3P30-201ENST00000601184 574 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 AC242628.1-201ENST00000606810 391 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 SNORA25.18-201ENST00000607153 114 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 MIR548AZ-201ENST00000616567 95 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 FTX_2.1-201ENST00000618816 94 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 MIR6079-201ENST00000635807 62 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 MIR3529-201ENST00000637713 78 ntBASIC-0.66□□□□□ -2.51
CCDC88BA6NC98 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC-0.66□□□□□ -2.52
CCDC88BA6NC98 SNORD115-41-201ENST00000363608 82 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 RNU6-188P-201ENST00000364207 107 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 RNU2-23P-201ENST00000410545 195 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 RNU4-63P-201ENST00000411313 118 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 AC245047.8-201ENST00000456455 284 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 RNU7-56P-201ENST00000458744 62 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 AC114982.2-201ENST00000461396 358 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 RNU4-76P-201ENST00000364509 141 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 MIR635-201ENST00000384830 98 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 SNORD41-201ENST00000386967 70 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 RNU6-994P-201ENST00000410507 111 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 VN1R10P-201ENST00000447106 875 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 SNORD126-201ENST00000459475 77 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 RNU6-94P-201ENST00000607728 107 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 AC008147.4-201ENST00000617570 1204 ntBASIC-0.67□□□□□ -2.52
CCDC88BA6NC98 AL451046.2-201ENST00000403074 277 ntBASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 RNU2-28P-201ENST00000410457 189 ntBASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 MTCO1P21-201ENST00000416634 589 ntBASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 AL353997.1-201ENST00000432936 108 ntBASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 MTATP6P30-201ENST00000443540 664 ntBASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 AC104629.1-201ENST00000494226 508 ntBASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 MTND2P33-201ENST00000506452 1031 ntBASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 AC087685.1-201ENST00000587507 141 ntBASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 CTHRC1P1-201ENST00000605383 469 ntBASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC-0.68□□□□□ -2.52
CCDC88BA6NC98 Y_RNA.25-201ENST00000362528 102 ntBASIC-0.69□□□□□ -2.52
CCDC88BA6NC98 RNY4P16-201ENST00000364768 94 ntBASIC-0.69□□□□□ -2.52
CCDC88BA6NC98 RNU6-657P-201ENST00000383904 107 ntBASIC-0.69□□□□□ -2.52
CCDC88BA6NC98 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.69□□□□□ -2.52
CCDC88BA6NC98 MIR653-201ENST00000385279 96 ntBASIC-0.69□□□□□ -2.52
CCDC88BA6NC98 HMGN2P26-201ENST00000463169 339 ntBASIC-0.69□□□□□ -2.52
CCDC88BA6NC98 MTND4LP26-201ENST00000518144 282 ntBASIC-0.69□□□□□ -2.52
CCDC88BA6NC98 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC-0.69□□□□□ -2.52
CCDC88BA6NC98 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC-0.69□□□□□ -2.52
CCDC88BA6NC98 AC013244.3-201ENST00000605614 388 ntBASIC-0.69□□□□□ -2.52
CCDC88BA6NC98 AC006157.1-201ENST00000611750 366 ntBASIC-0.69□□□□□ -2.52
CCDC88BA6NC98 MIR1-1-201ENST00000362147 71 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 RNU6-1031P-201ENST00000384773 107 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 SNORA75.6-201ENST00000391318 127 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 STAG3L5P-204ENST00000443759 179 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 snoU13.14-201ENST00000459372 104 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 SNORA70.12-201ENST00000516084 153 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 IGKV1-22-201ENST00000524313 326 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 AC090049.2-201ENST00000550377 109 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 AC025678.1-201ENST00000567861 338 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 AC234772.3-201ENST00000602277 528 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 TUG1_2.1-201ENST00000614234 87 ntBASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC-0.7□□□□□ -2.52
CCDC88BA6NC98 ZNF736P9Y-201ENST00000439586 1345 ntBASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 RNU6-756P-201ENST00000383997 107 ntBASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 RNU6-622P-201ENST00000384272 103 ntBASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 MIR196A2-201ENST00000385189 110 ntBASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 RNU6-754P-201ENST00000391166 107 ntBASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 AC013262.1-201ENST00000426710 252 ntBASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 AL050341.1-201ENST00000447743 313 ntBASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 AC090615.1-201ENST00000577519 154 ntBASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 DPPA3P3-201ENST00000603842 430 ntBASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 TTK-211ENST00000627129 240 ntTSL 5 BASIC-0.71□□□□□ -2.52
CCDC88BA6NC98 SNORD116-23-201ENST00000384645 92 ntBASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 SNORA12.2-201ENST00000391040 156 ntBASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 SNORA12-201ENST00000391162 147 ntBASIC-0.72□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms