Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.81□□□□□ -1.8
AP4E1Q9UPM8 RNU5F-2P-201ENST00000516066 82 ntBASIC3.81□□□□□ -1.8
AP4E1Q9UPM8 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.81□□□□□ -1.8
AP4E1Q9UPM8 MIR548X2-201ENST00000579776 100 ntBASIC3.81□□□□□ -1.8
AP4E1Q9UPM8 AC244505.7-201ENST00000599675 272 ntBASIC3.81□□□□□ -1.8
AP4E1Q9UPM8 AL020997.2-201ENST00000602607 184 ntBASIC3.81□□□□□ -1.8
AP4E1Q9UPM8 AL110115.1-201ENST00000614396 364 ntBASIC3.81□□□□□ -1.8
AP4E1Q9UPM8 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
AP4E1Q9UPM8 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 SNORA26.5-201ENST00000391215 123 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 CBX3P9-201ENST00000402326 552 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 HSPE1P26-201ENST00000405341 275 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AC004866.1-201ENST00000411748 78 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 EBAG9P1-201ENST00000418955 543 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AC008267.6-201ENST00000441664 139 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AC146507.2-201ENST00000460608 476 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AIG1P1-201ENST00000503376 148 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 RN7SKP164-201ENST00000516138 266 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 DEFB131C-201ENST00000528817 165 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AC006380.1-201ENST00000603598 186 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 SNRPGP20-201ENST00000604477 205 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AL162713.1-201ENST00000604480 262 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AL034555.1-201ENST00000604816 211 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AC012531.5-201ENST00000611375 151 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 AC010332.2-201ENST00000613083 1904 ntBASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
AP4E1Q9UPM8 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 SNORD115-30-201ENST00000364117 82 ntBASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 RNA5SP205-201ENST00000364653 136 ntBASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 MIR320B2-201ENST00000408479 138 ntBASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 RNU2-37P-201ENST00000410695 177 ntBASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 AL161651.1-201ENST00000440882 223 ntBASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 Y_RNA.797-201ENST00000515977 94 ntBASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 IGKV2D-19-201ENST00000523346 262 ntBASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 MIR4431-201ENST00000579990 94 ntBASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 HMGN2P15-201ENST00000585707 270 ntBASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.79□□□□□ -1.8
AP4E1Q9UPM8 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 MIR423-201ENST00000362201 94 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 Y_RNA.218-201ENST00000364218 104 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 snoU2_19.4-201ENST00000364329 80 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 RNA5SP201-201ENST00000410316 124 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 RPS20P10-201ENST00000451209 253 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 RPL31P41-201ENST00000477967 372 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 SNORA70.14-201ENST00000516205 110 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 AC136628.3-201ENST00000521868 290 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 HIGD1AP1-201ENST00000550979 275 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 AC069294.1-201ENST00000608397 350 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 AC013791.1-201ENST00000616619 62 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 AC073308.1-201ENST00000623696 305 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 AC244205.2-202ENST00000635781 342 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 MFSD8-236ENST00000641509 4050 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 CEP170P1-201ENST00000502249 4587 ntBASIC3.78□□□□□ -1.8
AP4E1Q9UPM8 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 Y_RNA.40-201ENST00000362645 93 ntBASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 RNU6-324P-201ENST00000363957 106 ntBASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 RNU6-215P-201ENST00000365169 102 ntBASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 SNORD6-201ENST00000365444 73 ntBASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 SNORD20-201ENST00000384550 80 ntBASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 RNU6-578P-201ENST00000390980 103 ntBASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 RNA5SP504-201ENST00000410676 117 ntBASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 CYCSP19-201ENST00000411715 316 ntBASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 AL445584.1-201ENST00000431451 330 ntBASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 AC084357.1-201ENST00000473404 255 ntBASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 AC006445.2-201ENST00000510061 472 ntBASIC3.77□□□□□ -1.81
AP4E1Q9UPM8 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms