Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AC018638.8-201ENST00000588755 281 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AL133215.3-201ENST00000609801 448 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 Y_RNA.783-201ENST00000613546 102 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AC009033.1-201ENST00000624279 431 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AC008555.8-201ENST00000623602 2168 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 RNU6-562P-201ENST00000362731 107 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 SNORA32.2-201ENST00000384049 122 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 SNORA12-201ENST00000391162 147 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 AL645568.3-201ENST00000433683 316 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 MTATP6P13-201ENST00000438531 667 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 RNA5SP233-201ENST00000459153 113 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 RPS27P21-201ENST00000486977 252 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 AC145146.1-201ENST00000496370 254 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 PTP4A1P4-201ENST00000512479 322 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 RNU6-1088P-201ENST00000516850 104 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 RNU6-273P-201ENST00000516937 96 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 AC026271.5-201ENST00000577873 130 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 Z98751.3-201ENST00000604447 521 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 AC022202.1-201ENST00000613515 211 ntBASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CPSF3Q9UKF6 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 RNU6-1159P-201ENST00000362933 107 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 Y_RNA.151-201ENST00000363566 112 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 SNORD116-11-201ENST00000383882 92 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 RNU4-52P-201ENST00000384209 138 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 SNORA46.1-201ENST00000391069 153 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 HMGN2P38-201ENST00000423806 265 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 AC027124.2-201ENST00000428249 105 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 IFNA20P-201ENST00000436840 528 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 snoU13.15-201ENST00000459407 104 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 RNU4-49P-201ENST00000516080 140 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 RNU6-965P-201ENST00000516721 96 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 RNU6-667P-201ENST00000517186 102 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 AL031274.2-201ENST00000599419 203 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 SNRPGP17-201ENST00000603780 214 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 AL132822.1-201ENST00000617063 513 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 AL162373.1-201ENST00000620433 407 ntBASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
CPSF3Q9UKF6 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 SNORD32B-201ENST00000364460 84 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 RNU6-546P-201ENST00000383991 107 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 MTCYBP2-201ENST00000407745 171 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 RNA5SP201-201ENST00000410316 124 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AL121890.1-201ENST00000435457 205 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 UBL5P3-201ENST00000475112 231 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AC104564.1-201ENST00000493028 407 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AC090255.1-201ENST00000495779 349 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AC022616.8-201ENST00000533569 253 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AC021231.3-201ENST00000558497 370 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 MIR5089-201ENST00000580047 84 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AL109918.3-201ENST00000603072 338 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 BNIP3P10-201ENST00000605360 577 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 MIR3976-201ENST00000606807 139 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AC116312.1-201ENST00000606841 314 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 MIR8076-201ENST00000611401 83 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 AC009248.2-201ENST00000619826 254 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 SDR42E1P4-201ENST00000620894 481 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.18□□□□□ -2.06
CPSF3Q9UKF6 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 Y_RNA.123-201ENST00000363338 102 ntBASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 Y_RNA.301-201ENST00000364990 103 ntBASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 MIR521-1-201ENST00000384902 87 ntBASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 AL356776.1-201ENST00000406574 447 ntBASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 AL590556.1-201ENST00000423231 483 ntBASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 MTND1P2-201ENST00000430604 821 ntBASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 AL021397.1-201ENST00000451806 248 ntBASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 AC025033.1-201ENST00000463883 194 ntBASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 AC130509.1-201ENST00000464158 433 ntBASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 MTCO2P30-201ENST00000503662 364 ntBASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 AC021146.2-201ENST00000504736 556 ntBASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.17□□□□□ -2.06
CPSF3Q9UKF6 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 RNA5SP160-201ENST00000364866 120 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 208.8 ms