Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC107982.1-201ENST00000507171 1300 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC-0.13□□□□□ -2.43
USF3Q68DE3 SNORD114-5-201ENST00000362928 70 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC-0.13□□□□□ -2.43
USF3Q68DE3 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC-0.13□□□□□ -2.43
USF3Q68DE3 SNORD65C-201ENST00000390962 71 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 RNU6-952P-201ENST00000391164 108 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 RNU6ATAC33P-201ENST00000408647 126 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 RNA5SP222-201ENST00000411039 105 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 MTCO3P41-201ENST00000414801 328 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC-0.13□□□□□ -2.43
USF3Q68DE3 DAP3P1-201ENST00000441522 278 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC-0.13□□□□□ -2.43
USF3Q68DE3 SNRPGP12-201ENST00000449481 213 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC-0.13□□□□□ -2.43
USF3Q68DE3 SNORD111.1-201ENST00000516421 86 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 uc_338.6-201ENST00000613544 171 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 MIR1264-201ENST00000616374 69 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 AL157786.1-207ENST00000627771 695 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 OR5AK4P-201ENST00000635912 903 ntBASIC-0.13□□□□□ -2.43
USF3Q68DE3 AL079343.1-201ENST00000572358 1771 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 MIR409-201ENST00000362237 79 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 RNA5SP98-201ENST00000363158 137 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 SNORD114-31-201ENST00000363219 75 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 Y_RNA.234-201ENST00000364409 97 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 Y_RNA.330-201ENST00000365230 109 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 RNU6-46P-201ENST00000383860 107 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 RNU6-701P-201ENST00000384059 107 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 RNU6-30P-201ENST00000384561 107 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 MIR1305-201ENST00000408300 86 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC-0.14□□□□□ -2.43
USF3Q68DE3 PAXBP1P1-201ENST00000449315 447 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 ART2BP-201ENST00000453501 499 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 MTND2P6-201ENST00000455337 1030 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 RNU6-143P-201ENST00000516942 93 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC-0.14□□□□□ -2.43
USF3Q68DE3 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC-0.14□□□□□ -2.43
USF3Q68DE3 AC011979.2-201ENST00000527568 352 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 AL133153.1-201ENST00000557756 303 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 BNIP3P9-201ENST00000603714 553 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 MTND4P21-201ENST00000453886 1357 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 RNU6-343P-201ENST00000364709 104 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 RNU6-796P-201ENST00000391086 107 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 AL603865.2-201ENST00000401679 213 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 ZNF736P10Y-201ENST00000403990 1110 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 RNFT1P2-201ENST00000443064 757 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 RPS29P8-201ENST00000445109 171 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 AC016925.1-201ENST00000458303 298 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 AL049830.1-201ENST00000468034 425 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 RNU6-947P-201ENST00000516264 106 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 RNU4-5P-201ENST00000607255 135 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 AC078938.1-201ENST00000620993 318 ntBASIC-0.14□□□□□ -2.43
USF3Q68DE3 MIR101-1-201ENST00000362265 75 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 SNORA9.1-201ENST00000362412 131 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 SNORD56.4-201ENST00000363883 71 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 SNORD51.1-201ENST00000365405 77 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 RAP1BP3-201ENST00000407180 549 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 AC104332.1-201ENST00000440471 797 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 AC016717.1-201ENST00000448918 286 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 LINC01399-202ENST00000458450 244 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 RNU7-136P-201ENST00000458819 69 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC-0.15□□□□□ -2.43
USF3Q68DE3 AP002001.1-203ENST00000534002 267 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC-0.15□□□□□ -2.43
USF3Q68DE3 AC090049.2-201ENST00000550377 109 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 MTND1P15-201ENST00000579262 949 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 MIR4764-201ENST00000580680 88 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 AL022154.1-201ENST00000604698 785 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 AC010975.3-201ENST00000618727 978 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 MIR6755-201ENST00000619993 66 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 RNU6-1284P-201ENST00000363701 100 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 RNU6-534P-201ENST00000364877 106 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 SNORD31B-201ENST00000364977 69 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 RNU6-395P-201ENST00000365662 106 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 RNU6-39P-201ENST00000384344 107 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 RNA5SP323-201ENST00000391094 133 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC-0.15□□□□□ -2.43
USF3Q68DE3 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC-0.15□□□□□ -2.43
USF3Q68DE3 SNRPGP1-201ENST00000553864 222 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 EIF1AXP2-201ENST00000555940 413 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 RSL24D1P11-201ENST00000591045 491 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC-0.15□□□□□ -2.43
USF3Q68DE3 MIR8054-201ENST00000620877 86 ntBASIC-0.15□□□□□ -2.43
USF3Q68DE3 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC-0.15□□□□□ -2.43
USF3Q68DE3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC-0.16□□□□□ -2.43
USF3Q68DE3 SNORA75B-201ENST00000384053 137 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 MIR224-201ENST00000384889 81 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC-0.16□□□□□ -2.44
USF3Q68DE3 AL451046.2-201ENST00000403074 277 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 AL034345.1-201ENST00000407768 123 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 RNU4-22P-201ENST00000411058 166 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 BX664727.1-201ENST00000416024 466 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC-0.16□□□□□ -2.44
USF3Q68DE3 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC-0.16□□□□□ -2.44
USF3Q68DE3 MTND2P20-201ENST00000440805 661 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 MTND4P25-201ENST00000441039 533 ntBASIC-0.16□□□□□ -2.44
USF3Q68DE3 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC-0.16□□□□□ -2.44
USF3Q68DE3 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC-0.16□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms