Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 FAM157A-202ENST00000615155 405 ntBASIC1.74□□□□□ -2.13
SHHQ15465 AP001486.3-201ENST00000615334 372 ntBASIC1.74□□□□□ -2.13
SHHQ15465 uc_338.34-201ENST00000617467 174 ntBASIC1.74□□□□□ -2.13
SHHQ15465 MIR6134-201ENST00000617606 109 ntBASIC1.74□□□□□ -2.13
SHHQ15465 AC104985.2-201ENST00000620598 500 ntBASIC1.74□□□□□ -2.13
SHHQ15465 PVT1_3.1-201ENST00000620853 95 ntBASIC1.74□□□□□ -2.13
SHHQ15465 AC005609.4-201ENST00000625071 447 ntBASIC1.74□□□□□ -2.13
SHHQ15465 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.74□□□□□ -2.13
SHHQ15465 Z99571.1-201ENST00000636677 394 ntBASIC1.74□□□□□ -2.13
SHHQ15465 MTND5P42-201ENST00000637720 498 ntBASIC1.74□□□□□ -2.13
SHHQ15465 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SHHQ15465 MTND4P12-201ENST00000498999 1377 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AC103710.2-202ENST00000641454 2853 ntBASIC1.73□□□□□ -2.13
SHHQ15465 CBX3P1-201ENST00000325243 554 ntBASIC1.73□□□□□ -2.13
SHHQ15465 Y_RNA.100-201ENST00000363141 102 ntBASIC1.73□□□□□ -2.13
SHHQ15465 Y_RNA.356-201ENST00000365475 113 ntBASIC1.73□□□□□ -2.13
SHHQ15465 Y_RNA.419-201ENST00000384041 102 ntBASIC1.73□□□□□ -2.13
SHHQ15465 Y_RNA.509-201ENST00000384506 99 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AL606923.1-201ENST00000406616 190 ntBASIC1.73□□□□□ -2.13
SHHQ15465 RN7SKP158-201ENST00000410453 326 ntBASIC1.73□□□□□ -2.13
SHHQ15465 RNA5SP111-201ENST00000411386 101 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AL160275.3-201ENST00000423876 471 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AL590632.1-201ENST00000424289 371 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AC137499.1-201ENST00000427602 88 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC1.73□□□□□ -2.13
SHHQ15465 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.73□□□□□ -2.13
SHHQ15465 SNORD97-201ENST00000459187 142 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.73□□□□□ -2.13
SHHQ15465 RNU6-277P-201ENST00000516272 106 ntBASIC1.73□□□□□ -2.13
SHHQ15465 RNU7-30P-201ENST00000516835 62 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AC009902.1-201ENST00000519351 183 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.73□□□□□ -2.13
SHHQ15465 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.73□□□□□ -2.13
SHHQ15465 AC104581.2-201ENST00000572227 430 ntBASIC1.73□□□□□ -2.13
SHHQ15465 MIR4742-201ENST00000581069 85 ntBASIC1.73□□□□□ -2.13
SHHQ15465 MIR3935-201ENST00000583472 104 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AC002044.1-201ENST00000606707 158 ntBASIC1.73□□□□□ -2.13
SHHQ15465 Z82243.1-201ENST00000609432 473 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AL365204.3-201ENST00000612448 685 ntBASIC1.73□□□□□ -2.13
SHHQ15465 DISC2.1-201ENST00000612827 205 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AL353770.2-201ENST00000620024 78 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AL162373.1-201ENST00000620433 407 ntBASIC1.73□□□□□ -2.13
SHHQ15465 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SHHQ15465 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SHHQ15465 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.72□□□□□ -2.13
SHHQ15465 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
SHHQ15465 AC073343.1-201ENST00000328239 651 ntBASIC1.72□□□□□ -2.13
SHHQ15465 RNU6-845P-201ENST00000362578 103 ntBASIC1.72□□□□□ -2.13
SHHQ15465 RNU6-371P-201ENST00000364283 108 ntBASIC1.72□□□□□ -2.13
SHHQ15465 Y_RNA.813-201ENST00000364639 102 ntBASIC1.72□□□□□ -2.13
SHHQ15465 RNU6-190P-201ENST00000384154 102 ntBASIC1.72□□□□□ -2.13
SHHQ15465 RNU6-658P-201ENST00000384606 106 ntBASIC1.72□□□□□ -2.13
SHHQ15465 SNORD73A-201ENST00000386062 65 ntBASIC1.72□□□□□ -2.13
SHHQ15465 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
SHHQ15465 RNA5SP219-201ENST00000390940 113 ntBASIC1.72□□□□□ -2.13
SHHQ15465 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
SHHQ15465 MIR1323-201ENST00000408090 73 ntBASIC1.72□□□□□ -2.13
SHHQ15465 CYCSP33-201ENST00000414485 327 ntBASIC1.72□□□□□ -2.13
SHHQ15465 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.72□□□□□ -2.13
SHHQ15465 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.72□□□□□ -2.13
SHHQ15465 AC098614.3-201ENST00000438957 440 ntBASIC1.72□□□□□ -2.13
SHHQ15465 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.72□□□□□ -2.13
SHHQ15465 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.72□□□□□ -2.13
SHHQ15465 AP001324.2-201ENST00000461163 319 ntBASIC1.72□□□□□ -2.13
SHHQ15465 TRBVA-201ENST00000498804 316 ntBASIC1.72□□□□□ -2.13
SHHQ15465 RPL39P5-202ENST00000512505 151 ntBASIC1.72□□□□□ -2.13
SHHQ15465 RNU6-1213P-201ENST00000517075 94 ntBASIC1.72□□□□□ -2.13
SHHQ15465 SNORA31.25-201ENST00000517242 134 ntBASIC1.72□□□□□ -2.13
SHHQ15465 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.72□□□□□ -2.13
SHHQ15465 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.72□□□□□ -2.13
SHHQ15465 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.72□□□□□ -2.13
SHHQ15465 AL121821.2-201ENST00000556081 394 ntBASIC1.72□□□□□ -2.13
SHHQ15465 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.72□□□□□ -2.13
SHHQ15465 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.72□□□□□ -2.13
SHHQ15465 MIR4795-201ENST00000584182 89 ntBASIC1.72□□□□□ -2.13
SHHQ15465 MIR3672-201ENST00000584290 82 ntBASIC1.72□□□□□ -2.13
SHHQ15465 AC092747.3-201ENST00000603769 301 ntBASIC1.72□□□□□ -2.13
SHHQ15465 SDR42E1P4-201ENST00000620894 481 ntBASIC1.72□□□□□ -2.13
SHHQ15465 MTND4P29-201ENST00000503122 1372 ntBASIC1.72□□□□□ -2.13
SHHQ15465 RNU4-73P-201ENST00000363164 141 ntBASIC1.71□□□□□ -2.14
SHHQ15465 RNU4-13P-201ENST00000364019 141 ntBASIC1.71□□□□□ -2.14
SHHQ15465 RNU6-384P-201ENST00000364900 104 ntBASIC1.71□□□□□ -2.14
SHHQ15465 Y_RNA.301-201ENST00000364990 103 ntBASIC1.71□□□□□ -2.14
SHHQ15465 Y_RNA.354-201ENST00000365448 111 ntBASIC1.71□□□□□ -2.14
SHHQ15465 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SHHQ15465 Y_RNA.474-201ENST00000384341 102 ntBASIC1.71□□□□□ -2.14
SHHQ15465 Y_RNA.481-201ENST00000384373 102 ntBASIC1.71□□□□□ -2.14
SHHQ15465 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SHHQ15465 RNU2-63P-201ENST00000410792 194 ntBASIC1.71□□□□□ -2.14
SHHQ15465 RPL21P90-201ENST00000415692 466 ntBASIC1.71□□□□□ -2.14
SHHQ15465 AL353621.1-201ENST00000418219 243 ntBASIC1.71□□□□□ -2.14
SHHQ15465 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC1.71□□□□□ -2.14
SHHQ15465 SNRPEP10-201ENST00000420249 274 ntBASIC1.71□□□□□ -2.14
SHHQ15465 MTND3P23-201ENST00000431980 347 ntBASIC1.71□□□□□ -2.14
SHHQ15465 AL591704.1-201ENST00000432574 275 ntBASIC1.71□□□□□ -2.14
SHHQ15465 ERLEC1P1-201ENST00000433806 578 ntBASIC1.71□□□□□ -2.14
SHHQ15465 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.71□□□□□ -2.14
SHHQ15465 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.71□□□□□ -2.14
SHHQ15465 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.71□□□□□ -2.14
SHHQ15465 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms