Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RPL30P11-203ENST00000598995 310 ntBASIC2.63□□□□□ -1.99
CTCFP49711 AC069528.2-201ENST00000624849 1991 ntBASIC2.63□□□□□ -1.99
CTCFP49711 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.62□□□□□ -1.99
CTCFP49711 CBX3P1-201ENST00000325243 554 ntBASIC2.62□□□□□ -1.99
CTCFP49711 SNORD114-26-201ENST00000363543 72 ntBASIC2.62□□□□□ -1.99
CTCFP49711 RNU6-457P-201ENST00000363999 107 ntBASIC2.62□□□□□ -1.99
CTCFP49711 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.62□□□□□ -1.99
CTCFP49711 RNU6-1013P-201ENST00000384180 107 ntBASIC2.62□□□□□ -1.99
CTCFP49711 MTND3P8-201ENST00000412909 339 ntBASIC2.62□□□□□ -1.99
CTCFP49711 AC138393.2-201ENST00000414742 246 ntBASIC2.62□□□□□ -1.99
CTCFP49711 RPL21P111-201ENST00000418453 477 ntBASIC2.62□□□□□ -1.99
CTCFP49711 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.62□□□□□ -1.99
CTCFP49711 MTND4LP16-201ENST00000440828 295 ntBASIC2.62□□□□□ -1.99
CTCFP49711 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.62□□□□□ -1.99
CTCFP49711 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.62□□□□□ -1.99
CTCFP49711 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.62□□□□□ -1.99
CTCFP49711 RPL30P1-201ENST00000488676 339 ntBASIC2.62□□□□□ -1.99
CTCFP49711 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.62□□□□□ -1.99
CTCFP49711 SNORA20.3-201ENST00000516880 132 ntBASIC2.62□□□□□ -1.99
CTCFP49711 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.62□□□□□ -1.99
CTCFP49711 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.62□□□□□ -1.99
CTCFP49711 AL356157.2-201ENST00000605122 111 ntBASIC2.62□□□□□ -1.99
CTCFP49711 MIR6779-201ENST00000617283 64 ntBASIC2.62□□□□□ -1.99
CTCFP49711 AL133216.2-202ENST00000634512 349 ntBASIC2.62□□□□□ -1.99
CTCFP49711 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.62□□□□□ -1.99
CTCFP49711 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
CTCFP49711 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CTCFP49711 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.61□□□□□ -1.99
CTCFP49711 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CTCFP49711 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CTCFP49711 U3.13-201ENST00000364804 214 ntBASIC2.61□□□□□ -1.99
CTCFP49711 RNA5SP125-201ENST00000364843 120 ntBASIC2.61□□□□□ -1.99
CTCFP49711 RNU6-767P-201ENST00000384132 107 ntBASIC2.61□□□□□ -1.99
CTCFP49711 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CTCFP49711 CBX3P9-201ENST00000402326 552 ntBASIC2.61□□□□□ -1.99
CTCFP49711 AC019129.1-201ENST00000403786 261 ntBASIC2.61□□□□□ -1.99
CTCFP49711 RN7SKP61-201ENST00000410642 295 ntBASIC2.61□□□□□ -1.99
CTCFP49711 AC009238.1-201ENST00000442165 424 ntBASIC2.61□□□□□ -1.99
CTCFP49711 AC009237.6-201ENST00000446969 424 ntBASIC2.61□□□□□ -1.99
CTCFP49711 MTND1P17-201ENST00000448961 204 ntBASIC2.61□□□□□ -1.99
CTCFP49711 AC130509.1-201ENST00000464158 433 ntBASIC2.61□□□□□ -1.99
CTCFP49711 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.61□□□□□ -1.99
CTCFP49711 RNA5SP82-201ENST00000516707 92 ntBASIC2.61□□□□□ -1.99
CTCFP49711 RNU6-566P-201ENST00000516790 107 ntBASIC2.61□□□□□ -1.99
CTCFP49711 RNA5SP454-201ENST00000517231 127 ntBASIC2.61□□□□□ -1.99
CTCFP49711 AP005639.2-201ENST00000527592 928 ntBASIC2.61□□□□□ -1.99
CTCFP49711 AP001094.1-201ENST00000579805 193 ntBASIC2.61□□□□□ -1.99
CTCFP49711 AL133215.3-201ENST00000609801 448 ntBASIC2.61□□□□□ -1.99
CTCFP49711 MIR6895-201ENST00000613497 78 ntBASIC2.61□□□□□ -1.99
CTCFP49711 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.61□□□□□ -1.99
CTCFP49711 RNU6-227P-201ENST00000362865 103 ntBASIC2.6□□□□□ -1.99
CTCFP49711 RNA5SP240-201ENST00000365355 128 ntBASIC2.6□□□□□ -1.99
CTCFP49711 AP1B1P2-201ENST00000416196 106 ntBASIC2.6□□□□□ -1.99
CTCFP49711 MTND3P9-201ENST00000429526 346 ntBASIC2.6□□□□□ -1.99
CTCFP49711 AL133396.1-201ENST00000432048 687 ntBASIC2.6□□□□□ -1.99
CTCFP49711 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.6□□□□□ -1.99
CTCFP49711 AL353752.1-201ENST00000454946 260 ntBASIC2.6□□□□□ -1.99
CTCFP49711 PMCHL2-203ENST00000457791 237 ntBASIC2.6□□□□□ -1.99
CTCFP49711 U8.21-201ENST00000459536 136 ntBASIC2.6□□□□□ -1.99
CTCFP49711 SNRPGP7-201ENST00000469016 106 ntBASIC2.6□□□□□ -1.99
CTCFP49711 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.6□□□□□ -1.99
CTCFP49711 PTP4A1P4-201ENST00000512479 322 ntBASIC2.6□□□□□ -1.99
CTCFP49711 AC046134.1-201ENST00000514454 666 ntBASIC2.6□□□□□ -1.99
CTCFP49711 RNU5F-2P-201ENST00000516066 82 ntBASIC2.6□□□□□ -1.99
CTCFP49711 AC115990.1-201ENST00000526957 301 ntBASIC2.6□□□□□ -1.99
CTCFP49711 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.6□□□□□ -1.99
CTCFP49711 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CTCFP49711 AL022345.1-201ENST00000607292 135 ntBASIC2.6□□□□□ -1.99
CTCFP49711 MIR6504-201ENST00000613520 61 ntBASIC2.6□□□□□ -1.99
CTCFP49711 AC245884.12-201ENST00000615364 59 ntBASIC2.6□□□□□ -1.99
CTCFP49711 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.6□□□□□ -1.99
CTCFP49711 SNORA43.4-201ENST00000629559 138 ntBASIC2.6□□□□□ -1.99
CTCFP49711 MIR203B-201ENST00000636080 86 ntBASIC2.6□□□□□ -1.99
CTCFP49711 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CTCFP49711 RNU6-845P-201ENST00000362578 103 ntBASIC2.59□□□□□ -1.99
CTCFP49711 Y_RNA.151-201ENST00000363566 112 ntBASIC2.59□□□□□ -1.99
CTCFP49711 RNU6-1032P-201ENST00000384100 107 ntBASIC2.59□□□□□ -1.99
CTCFP49711 MIR221-201ENST00000385135 110 ntBASIC2.59□□□□□ -1.99
CTCFP49711 SNORA26.3-201ENST00000391119 136 ntBASIC2.59□□□□□ -1.99
CTCFP49711 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.59□□□□□ -1.99
CTCFP49711 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.59□□□□□ -1.99
CTCFP49711 PPP1R2P5-201ENST00000457256 603 ntBASIC2.59□□□□□ -1.99
CTCFP49711 CYP2C59P-201ENST00000457790 269 ntBASIC2.59□□□□□ -1.99
CTCFP49711 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.59□□□□□ -1.99
CTCFP49711 AC118273.2-201ENST00000532092 465 ntBASIC2.59□□□□□ -1.99
CTCFP49711 HSPE1P4-201ENST00000550617 308 ntBASIC2.59□□□□□ -1.99
CTCFP49711 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.59□□□□□ -1.99
CTCFP49711 RPS3AP23-202ENST00000574601 686 ntBASIC2.59□□□□□ -1.99
CTCFP49711 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.59□□□□□ -1.99
CTCFP49711 AL138963.2-201ENST00000605137 226 ntBASIC2.59□□□□□ -1.99
CTCFP49711 AC022306.2-201ENST00000617563 647 ntBASIC2.59□□□□□ -1.99
CTCFP49711 MIR5739-201ENST00000619803 80 ntBASIC2.59□□□□□ -1.99
CTCFP49711 AL450472.1-202ENST00000637286 180 ntBASIC2.59□□□□□ -1.99
CTCFP49711 AP000560.1-201ENST00000624150 1937 ntBASIC2.59□□□□□ -1.99
CTCFP49711 AC080100.1-201ENST00000624239 5356 ntBASIC2.58□□□□□ -2
CTCFP49711 Y_RNA.166-201ENST00000363730 102 ntBASIC2.58□□□□□ -2
CTCFP49711 Y_RNA.303-201ENST00000364998 94 ntBASIC2.58□□□□□ -2
CTCFP49711 MIR95-201ENST00000385072 81 ntBASIC2.58□□□□□ -2
CTCFP49711 MIR1276-201ENST00000408707 83 ntBASIC2.58□□□□□ -2
CTCFP49711 PDCL2P1-201ENST00000419302 352 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms