Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.2□□□□□ -1.9
MSX2P35548 TRIAP1P1-201ENST00000427062 225 ntBASIC3.2□□□□□ -1.9
MSX2P35548 AC078809.1-201ENST00000427601 140 ntBASIC3.2□□□□□ -1.9
MSX2P35548 AP002884.2-201ENST00000471647 395 ntBASIC3.2□□□□□ -1.9
MSX2P35548 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.2□□□□□ -1.9
MSX2P35548 PHBP14-201ENST00000512887 367 ntBASIC3.2□□□□□ -1.9
MSX2P35548 AC022559.1-201ENST00000520905 205 ntBASIC3.2□□□□□ -1.9
MSX2P35548 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.2□□□□□ -1.9
MSX2P35548 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.2□□□□□ -1.9
MSX2P35548 AC009163.5-201ENST00000575421 637 ntBASIC3.2□□□□□ -1.9
MSX2P35548 AC008749.1-201ENST00000597650 306 ntBASIC3.2□□□□□ -1.9
MSX2P35548 AL138963.2-201ENST00000605137 226 ntBASIC3.2□□□□□ -1.9
MSX2P35548 MIR6075-201ENST00000620782 95 ntBASIC3.2□□□□□ -1.9
MSX2P35548 IGHVIII-44-202ENST00000636235 289 ntBASIC3.2□□□□□ -1.9
MSX2P35548 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.2□□□□□ -1.9
MSX2P35548 AC135776.4-201ENST00000624300 1904 ntBASIC3.2□□□□□ -1.9
MSX2P35548 AC110774.1-201ENST00000623567 2018 ntBASIC3.2□□□□□ -1.9
MSX2P35548 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.2□□□□□ -1.9
MSX2P35548 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
MSX2P35548 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.19□□□□□ -1.9
MSX2P35548 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
MSX2P35548 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
MSX2P35548 MIR410-201ENST00000362222 80 ntBASIC3.19□□□□□ -1.9
MSX2P35548 RNU6-1020P-201ENST00000363684 107 ntBASIC3.19□□□□□ -1.9
MSX2P35548 RNA5SP387-201ENST00000364226 106 ntBASIC3.19□□□□□ -1.9
MSX2P35548 SNORA70.4-201ENST00000365509 134 ntBASIC3.19□□□□□ -1.9
MSX2P35548 Y_RNA.590-201ENST00000410140 107 ntBASIC3.19□□□□□ -1.9
MSX2P35548 RNU2-61P-201ENST00000411069 191 ntBASIC3.19□□□□□ -1.9
MSX2P35548 RPL19P1-201ENST00000411635 428 ntBASIC3.19□□□□□ -1.9
MSX2P35548 AL390729.2-201ENST00000416137 156 ntBASIC3.19□□□□□ -1.9
MSX2P35548 BPY2DP-201ENST00000422208 265 ntBASIC3.19□□□□□ -1.9
MSX2P35548 MTCO1P5-201ENST00000433573 344 ntBASIC3.19□□□□□ -1.9
MSX2P35548 RPL23AP3-201ENST00000453844 468 ntBASIC3.19□□□□□ -1.9
MSX2P35548 RNU6-1198P-201ENST00000516904 67 ntBASIC3.19□□□□□ -1.9
MSX2P35548 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.19□□□□□ -1.9
MSX2P35548 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.19□□□□□ -1.9
MSX2P35548 RPL21P9-201ENST00000556149 474 ntBASIC3.19□□□□□ -1.9
MSX2P35548 AC021231.3-201ENST00000558497 370 ntBASIC3.19□□□□□ -1.9
MSX2P35548 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.19□□□□□ -1.9
MSX2P35548 RN7SL703P-201ENST00000578485 302 ntBASIC3.19□□□□□ -1.9
MSX2P35548 AC072026.1-201ENST00000605023 201 ntBASIC3.19□□□□□ -1.9
MSX2P35548 AL359198.2-201ENST00000611836 194 ntBASIC3.19□□□□□ -1.9
MSX2P35548 CR392039.5-201ENST00000623201 510 ntBASIC3.19□□□□□ -1.9
MSX2P35548 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.19□□□□□ -1.9
MSX2P35548 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
MSX2P35548 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
MSX2P35548 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
MSX2P35548 AC092268.1-201ENST00000342691 405 ntBASIC3.18□□□□□ -1.9
MSX2P35548 RNU6-1285P-201ENST00000363480 105 ntBASIC3.18□□□□□ -1.9
MSX2P35548 RNU6-873P-201ENST00000363833 107 ntBASIC3.18□□□□□ -1.9
MSX2P35548 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.18□□□□□ -1.9
MSX2P35548 RNU6-622P-201ENST00000384272 103 ntBASIC3.18□□□□□ -1.9
MSX2P35548 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
MSX2P35548 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.18□□□□□ -1.9
MSX2P35548 SNORA11.1-201ENST00000408133 129 ntBASIC3.18□□□□□ -1.9
MSX2P35548 RN7SKP156-201ENST00000410308 342 ntBASIC3.18□□□□□ -1.9
MSX2P35548 RPS26P42-201ENST00000413485 326 ntBASIC3.18□□□□□ -1.9
MSX2P35548 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.18□□□□□ -1.9
MSX2P35548 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.18□□□□□ -1.9
MSX2P35548 MRPS10P1-201ENST00000448483 130 ntBASIC3.18□□□□□ -1.9
MSX2P35548 AC115115.1-201ENST00000449927 248 ntBASIC3.18□□□□□ -1.9
MSX2P35548 RPL26P9-201ENST00000457466 433 ntBASIC3.18□□□□□ -1.9
MSX2P35548 SNORD2.1-201ENST00000458762 69 ntBASIC3.18□□□□□ -1.9
MSX2P35548 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.18□□□□□ -1.9
MSX2P35548 AC245166.1-201ENST00000521012 253 ntBASIC3.18□□□□□ -1.9
MSX2P35548 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.18□□□□□ -1.9
MSX2P35548 NACAP3-201ENST00000552100 481 ntBASIC3.18□□□□□ -1.9
MSX2P35548 AC021739.1-201ENST00000559631 174 ntBASIC3.18□□□□□ -1.9
MSX2P35548 AC055872.1-201ENST00000570978 278 ntBASIC3.18□□□□□ -1.9
MSX2P35548 MIR5685-201ENST00000579080 79 ntBASIC3.18□□□□□ -1.9
MSX2P35548 AL078605.1-201ENST00000603529 500 ntBASIC3.18□□□□□ -1.9
MSX2P35548 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.18□□□□□ -1.9
MSX2P35548 MAPK10-362ENST00000641864 4484 ntBASIC3.18□□□□□ -1.9
MSX2P35548 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
MSX2P35548 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.18□□□□□ -1.9
MSX2P35548 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
MSX2P35548 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.18□□□□□ -1.9
MSX2P35548 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
MSX2P35548 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
MSX2P35548 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.17□□□□□ -1.9
MSX2P35548 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
MSX2P35548 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
MSX2P35548 ADAM3A-203ENST00000461344 2157 ntBASIC3.17□□□□□ -1.9
MSX2P35548 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.17□□□□□ -1.9
MSX2P35548 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.17□□□□□ -1.9
MSX2P35548 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
MSX2P35548 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
MSX2P35548 RNU6-799P-201ENST00000363567 107 ntBASIC3.17□□□□□ -1.9
MSX2P35548 RPL21P3-201ENST00000395517 478 ntBASIC3.17□□□□□ -1.9
MSX2P35548 RN7SKP51-201ENST00000410781 304 ntBASIC3.17□□□□□ -1.9
MSX2P35548 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.17□□□□□ -1.9
MSX2P35548 AL445584.1-201ENST00000431451 330 ntBASIC3.17□□□□□ -1.9
MSX2P35548 AC244670.1-201ENST00000436879 112 ntBASIC3.17□□□□□ -1.9
MSX2P35548 AC010095.1-201ENST00000443543 144 ntBASIC3.17□□□□□ -1.9
MSX2P35548 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.17□□□□□ -1.9
MSX2P35548 Y_RNA.638-201ENST00000459374 113 ntBASIC3.17□□□□□ -1.9
MSX2P35548 RNU7-23P-201ENST00000459465 62 ntBASIC3.17□□□□□ -1.9
MSX2P35548 AC146507.2-201ENST00000460608 476 ntBASIC3.17□□□□□ -1.9
MSX2P35548 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.17□□□□□ -1.9
MSX2P35548 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms