Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC069294.1-201ENST00000608397 350 ntBASIC2.55□□□□□ -2
SHMT1P34896 AC104985.2-201ENST00000620598 500 ntBASIC2.55□□□□□ -2
SHMT1P34896 AL359757.2-201ENST00000624309 274 ntBASIC2.55□□□□□ -2
SHMT1P34896 MIR219B-201ENST00000637023 88 ntBASIC2.55□□□□□ -2
SHMT1P34896 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.55□□□□□ -2
SHMT1P34896 AC092881.1-201ENST00000638218 2733 ntBASIC2.55□□□□□ -2
SHMT1P34896 RNU4-73P-201ENST00000363164 141 ntBASIC2.54□□□□□ -2
SHMT1P34896 U3.13-201ENST00000364804 214 ntBASIC2.54□□□□□ -2
SHMT1P34896 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.54□□□□□ -2
SHMT1P34896 Y_RNA.594-201ENST00000410373 140 ntBASIC2.54□□□□□ -2
SHMT1P34896 RNU6-174P-201ENST00000410406 106 ntBASIC2.54□□□□□ -2
SHMT1P34896 RNU4-14P-201ENST00000410858 122 ntBASIC2.54□□□□□ -2
SHMT1P34896 AIMP1P2-201ENST00000425294 312 ntBASIC2.54□□□□□ -2
SHMT1P34896 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.54□□□□□ -2
SHMT1P34896 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.54□□□□□ -2
SHMT1P34896 MIR3136-201ENST00000583498 78 ntBASIC2.54□□□□□ -2
SHMT1P34896 AC098657.3-201ENST00000620434 263 ntBASIC2.54□□□□□ -2
SHMT1P34896 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SHMT1P34896 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.53□□□□□ -2
SHMT1P34896 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.53□□□□□ -2
SHMT1P34896 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
SHMT1P34896 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
SHMT1P34896 ZNF271P-202ENST00000465539 1970 ntBASIC2.53□□□□□ -2
SHMT1P34896 Y_RNA.40-201ENST00000362645 93 ntBASIC2.53□□□□□ -2
SHMT1P34896 SET-203ENST00000372688 801 ntTSL 2 BASIC2.53□□□□□ -2
SHMT1P34896 RNU6-1297P-201ENST00000384415 104 ntBASIC2.53□□□□□ -2
SHMT1P34896 Y_RNA.504-201ENST00000384481 104 ntBASIC2.53□□□□□ -2
SHMT1P34896 CBX3P9-201ENST00000402326 552 ntBASIC2.53□□□□□ -2
SHMT1P34896 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.53□□□□□ -2
SHMT1P34896 AC008267.5-201ENST00000424928 265 ntBASIC2.53□□□□□ -2
SHMT1P34896 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.53□□□□□ -2
SHMT1P34896 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.53□□□□□ -2
SHMT1P34896 CR769767.1-201ENST00000436337 346 ntBASIC2.53□□□□□ -2
SHMT1P34896 GPM6BP3-201ENST00000442797 145 ntBASIC2.53□□□□□ -2
SHMT1P34896 AL121594.1-201ENST00000475906 575 ntBASIC2.53□□□□□ -2
SHMT1P34896 RNU5F-2P-201ENST00000516066 82 ntBASIC2.53□□□□□ -2
SHMT1P34896 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.53□□□□□ -2
SHMT1P34896 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.53□□□□□ -2
SHMT1P34896 AC109446.1-201ENST00000566172 220 ntBASIC2.53□□□□□ -2
SHMT1P34896 AC105245.1-201ENST00000581934 244 ntBASIC2.53□□□□□ -2
SHMT1P34896 MIR3117-201ENST00000584034 78 ntBASIC2.53□□□□□ -2
SHMT1P34896 AC011494.1-201ENST00000596454 237 ntBASIC2.53□□□□□ -2
SHMT1P34896 AL356280.1-201ENST00000603614 379 ntBASIC2.53□□□□□ -2
SHMT1P34896 AP000654.2-201ENST00000605633 586 ntBASIC2.53□□□□□ -2
SHMT1P34896 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.52□□□□□ -2.01
SHMT1P34896 RNU4-56P-201ENST00000364700 142 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 MIR764-201ENST00000390811 85 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 SNORA75.4-201ENST00000391278 119 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.52□□□□□ -2.01
SHMT1P34896 RNU2-2P-201ENST00000410396 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 RNU6-370P-201ENST00000411008 104 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.52□□□□□ -2.01
SHMT1P34896 AC091874.1-201ENST00000511402 339 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 Y_RNA.670-201ENST00000516255 105 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 HSPE1P18-201ENST00000517602 280 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.52□□□□□ -2.01
SHMT1P34896 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.52□□□□□ -2.01
SHMT1P34896 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
SHMT1P34896 AC021231.3-201ENST00000558497 370 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.52□□□□□ -2.01
SHMT1P34896 FRG2DP-202ENST00000566967 323 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.52□□□□□ -2.01
SHMT1P34896 RPL30P11-203ENST00000598995 310 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 C8orf59P2-201ENST00000603441 271 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 AC009229.3-201ENST00000608056 282 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.15-201ENST00000611544 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.16-201ENST00000613119 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.12-201ENST00000613778 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.20-201ENST00000613956 192 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.9-201ENST00000615427 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.11-201ENST00000616345 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.2-201ENST00000616535 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.3-201ENST00000617785 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.19-201ENST00000618602 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 RNU2-1-201ENST00000618664 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.6-201ENST00000619225 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.5-201ENST00000619465 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 U2.10-201ENST00000620268 191 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 MIR6132-201ENST00000622083 109 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 AL359697.1-201ENST00000624879 587 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 KPNA2P1-201ENST00000458289 1591 ntBASIC2.52□□□□□ -2.01
SHMT1P34896 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.52□□□□□ -2.01
SHMT1P34896 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.51□□□□□ -2.01
SHMT1P34896 Y_RNA.2-201ENST00000362330 96 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 SNORD50.1-201ENST00000362987 71 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 RNU6-797P-201ENST00000363101 109 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 RNU6-1059P-201ENST00000363752 98 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 RNU6-842P-201ENST00000384269 107 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 SNORA26.3-201ENST00000391119 136 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 MTCYBP4-201ENST00000401524 249 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 AL590135.1-201ENST00000422215 156 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 AC019205.3-201ENST00000424573 156 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.51□□□□□ -2.01
SHMT1P34896 AC236972.2-201ENST00000434979 310 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.51□□□□□ -2.01
SHMT1P34896 AC016700.2-201ENST00000446011 156 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.51□□□□□ -2.01
SHMT1P34896 AC140059.1-201ENST00000489238 361 ntBASIC2.51□□□□□ -2.01
SHMT1P34896 AC015911.1-201ENST00000495111 156 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms