Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC105185.1-201ENST00000518705 535 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.52□□□□□ -2.33
SCN3AQ9NY46 ZNF321P-202ENST00000550843 495 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 MIR4653-201ENST00000585107 83 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC0.52□□□□□ -2.33
SCN3AQ9NY46 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
SCN3AQ9NY46 uc_338.11-201ENST00000619132 160 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AL031667.3-201ENST00000620124 655 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 U4.7-201ENST00000638126 106 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC010615.1-201ENST00000594254 1764 ntBASIC0.51□□□□□ -2.33
SCN3AQ9NY46 RNU6-413P-201ENST00000384115 107 ntBASIC0.51□□□□□ -2.33
SCN3AQ9NY46 RNU6-1257P-201ENST00000384625 110 ntBASIC0.51□□□□□ -2.33
SCN3AQ9NY46 SNORA26.3-201ENST00000391119 136 ntBASIC0.51□□□□□ -2.33
SCN3AQ9NY46 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.51□□□□□ -2.33
SCN3AQ9NY46 OR2AQ1P-201ENST00000451972 200 ntBASIC0.51□□□□□ -2.33
SCN3AQ9NY46 AC010531.2-201ENST00000465012 153 ntBASIC0.51□□□□□ -2.33
SCN3AQ9NY46 RPS26P45-201ENST00000471748 340 ntBASIC0.51□□□□□ -2.33
SCN3AQ9NY46 PSMC1P5-201ENST00000512850 177 ntBASIC0.51□□□□□ -2.33
SCN3AQ9NY46 RNU6-1003P-201ENST00000517099 105 ntBASIC0.51□□□□□ -2.33
SCN3AQ9NY46 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.51□□□□□ -2.33
SCN3AQ9NY46 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC0.51□□□□□ -2.33
SCN3AQ9NY46 RNU6-87P-201ENST00000607561 108 ntBASIC0.51□□□□□ -2.33
SCN3AQ9NY46 AL159152.1-201ENST00000635019 2587 ntBASIC0.51□□□□□ -2.33
SCN3AQ9NY46 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC0.5□□□□□ -2.33
SCN3AQ9NY46 Y_RNA.97-201ENST00000363094 102 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNU6-527P-201ENST00000363425 104 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 Y_RNA.295-201ENST00000364918 102 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNU6-1235P-201ENST00000384559 107 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNU6-296P-201ENST00000384608 107 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNU6-906P-201ENST00000384700 70 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 AC060773.1-201ENST00000421698 310 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 MTND1P32-201ENST00000433043 938 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNU6-498P-201ENST00000459468 107 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.5□□□□□ -2.33
SCN3AQ9NY46 AC112187.2-201ENST00000604345 283 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 AL158211.2-201ENST00000607282 395 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNU6-371P-201ENST00000364283 108 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNU6-25P-201ENST00000383873 107 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNU6-48P-201ENST00000384161 107 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNU6-16P-201ENST00000384385 107 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNU6-15P-201ENST00000384534 107 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNU6-29P-201ENST00000384637 107 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 MIR1284-201ENST00000408337 120 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNA5SP511-201ENST00000410487 115 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.5□□□□□ -2.33
SCN3AQ9NY46 TXNL1P1-201ENST00000429528 554 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 HSPE1P9-201ENST00000440046 311 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 PRPS1P1-201ENST00000445305 876 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.5□□□□□ -2.33
SCN3AQ9NY46 AC097473.1-201ENST00000508142 408 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC0.5□□□□□ -2.33
SCN3AQ9NY46 AL021368.1-201ENST00000607490 540 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 AC091965.4-201ENST00000607691 587 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 AC005520.5-201ENST00000613926 164 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 MIR924-201ENST00000638017 53 ntBASIC0.5□□□□□ -2.33
SCN3AQ9NY46 RNA5SP347-201ENST00000362445 119 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 RNU5E-10P-201ENST00000363506 118 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 RNU6-384P-201ENST00000364900 104 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 SNORD31B-201ENST00000364977 69 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
SCN3AQ9NY46 MIR200A-201ENST00000384875 90 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 SNORA12.2-201ENST00000391040 156 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 MTCYBP2-201ENST00000407745 171 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AC123900.1-201ENST00000420390 96 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 SNX2P2-201ENST00000424553 323 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AC005534.2-201ENST00000431047 433 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.49□□□□□ -2.33
SCN3AQ9NY46 GAPDHP17-201ENST00000449858 1001 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AC011406.1-201ENST00000512440 370 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC0.49□□□□□ -2.33
SCN3AQ9NY46 RNU1-86P-201ENST00000516108 154 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 RNU1-107P-201ENST00000516617 154 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 SUMO2P16-201ENST00000519475 264 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC0.49□□□□□ -2.33
SCN3AQ9NY46 MIR3923-201ENST00000579521 83 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AL034555.1-201ENST00000604816 211 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AC091925.1-201ENST00000623204 462 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AC008163.1-202ENST00000636004 2889 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 AL442644.1-201ENST00000454390 3105 ntBASIC0.49□□□□□ -2.33
SCN3AQ9NY46 Y_RNA.480-201ENST00000384364 102 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 RNU6-1179P-201ENST00000384667 107 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.48□□□□□ -2.33
SCN3AQ9NY46 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
SCN3AQ9NY46 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.48□□□□□ -2.33
SCN3AQ9NY46 SNAP23P1-201ENST00000433229 246 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 AC013470.1-201ENST00000453438 462 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 HMGN2P9-201ENST00000476875 229 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.48□□□□□ -2.33
SCN3AQ9NY46 MTND2P31-201ENST00000512602 616 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 SNORD60.2-201ENST00000516883 86 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 RNA5SP503-201ENST00000517047 117 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 AL596327.1-201ENST00000603629 213 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 CTHRC1P1-201ENST00000605383 469 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms