Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC244670.1-201ENST00000436879 112 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.96□□□□□ -2.1
LIME1Q9H400 DAP3P1-201ENST00000441522 278 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.96□□□□□ -2.1
LIME1Q9H400 AC130509.1-201ENST00000464158 433 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 RPL9P9-202ENST00000466501 579 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 RPL31P58-201ENST00000469001 379 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 AC114801.2-201ENST00000503825 781 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 AC016632.1-201ENST00000503994 196 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 HMGB3P3-201ENST00000510526 400 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.96□□□□□ -2.1
LIME1Q9H400 AP005902.1-201ENST00000521358 186 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 AP005639.2-201ENST00000527592 928 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 PRELID2P1-201ENST00000552837 301 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.96□□□□□ -2.1
LIME1Q9H400 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.96□□□□□ -2.1
LIME1Q9H400 AC008121.3-201ENST00000618726 433 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 SNORD98-201ENST00000636377 67 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 AC016717.2-201ENST00000609089 5141 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
LIME1Q9H400 RNU1-23P-201ENST00000363361 144 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 Y_RNA.166-201ENST00000363730 102 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 U3.13-201ENST00000364804 214 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 RNU6-142P-201ENST00000384019 107 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 RNU6-1032P-201ENST00000384100 107 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 RNU6-1013P-201ENST00000384180 107 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 RNU6-510P-201ENST00000391239 108 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 AL591034.2-201ENST00000402839 359 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.95□□□□□ -2.1
LIME1Q9H400 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.95□□□□□ -2.1
LIME1Q9H400 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.95□□□□□ -2.1
LIME1Q9H400 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.95□□□□□ -2.1
LIME1Q9H400 RPL23AP42-201ENST00000471152 471 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 AC018868.1-201ENST00000491307 315 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 SNORA31.16-201ENST00000516773 139 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 RNA5SP454-201ENST00000517231 127 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 RNU6-586P-201ENST00000517265 104 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 RNU1-104P-201ENST00000517280 175 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.95□□□□□ -2.1
LIME1Q9H400 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.95□□□□□ -2.1
LIME1Q9H400 HSPE1P4-201ENST00000550617 308 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 SNRPGP18-201ENST00000553000 214 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.95□□□□□ -2.1
LIME1Q9H400 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.95□□□□□ -2.1
LIME1Q9H400 AL078605.1-201ENST00000603529 500 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 MIR8076-201ENST00000611401 83 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 FO624990.1-201ENST00000636373 85 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 AC099654.14-201ENST00000638599 341 ntBASIC1.95□□□□□ -2.1
LIME1Q9H400 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
LIME1Q9H400 SNORA67.1-201ENST00000364749 141 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 Y_RNA.390-201ENST00000383932 102 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 SNORA32.2-201ENST00000384049 122 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 MIR221-201ENST00000385135 110 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 MT-TL1-201ENST00000386347 75 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 RNA5SP201-201ENST00000410316 124 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 MTND3P8-201ENST00000412909 339 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 EIF1AXP1-201ENST00000419267 435 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 MTND3P9-201ENST00000429526 346 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 AC018634.1-201ENST00000437554 401 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.94□□□□□ -2.1
LIME1Q9H400 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.94□□□□□ -2.1
LIME1Q9H400 PRDX4P1-201ENST00000507189 574 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.94□□□□□ -2.1
LIME1Q9H400 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.94□□□□□ -2.1
LIME1Q9H400 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.94□□□□□ -2.1
LIME1Q9H400 AC046134.1-201ENST00000514454 666 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 SNORA20.3-201ENST00000516880 132 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.94□□□□□ -2.1
LIME1Q9H400 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.94□□□□□ -2.1
LIME1Q9H400 AC021231.3-201ENST00000558497 370 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.94□□□□□ -2.1
LIME1Q9H400 AC016727.1-205ENST00000605437 569 ntBASIC1.94□□□□□ -2.1
LIME1Q9H400 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.94□□□□□ -2.1
LIME1Q9H400 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
LIME1Q9H400 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
LIME1Q9H400 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
LIME1Q9H400 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
LIME1Q9H400 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
LIME1Q9H400 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.93□□□□□ -2.1
LIME1Q9H400 snoU2_19.1-201ENST00000362361 80 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 RNU4-15P-201ENST00000362613 141 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 RNU6-784P-201ENST00000384330 106 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 BTF3L4P2-201ENST00000392798 346 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 MTCYBP2-201ENST00000407745 171 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 RPL21P111-201ENST00000418453 477 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 AL590135.1-201ENST00000422215 156 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 AC019205.3-201ENST00000424573 156 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 MTND4LP16-201ENST00000440828 295 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 AC016700.2-201ENST00000446011 156 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 AC104435.1-201ENST00000483483 166 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 AC015911.1-201ENST00000495111 156 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 RNU6-566P-201ENST00000516790 107 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.93□□□□□ -2.1
LIME1Q9H400 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.93□□□□□ -2.1
LIME1Q9H400 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.93□□□□□ -2.1
LIME1Q9H400 AC011712.1-201ENST00000588959 234 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 Z98751.3-201ENST00000604447 521 ntBASIC1.93□□□□□ -2.1
LIME1Q9H400 AL161423.1-201ENST00000613700 262 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 155.1 ms