Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC090517.3-201ENST00000625170 141 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AL691447.3-201ENST00000635020 330 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NKX3-1Q99801 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.12□□□□□ -2.07
NKX3-1Q99801 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NKX3-1Q99801 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NKX3-1Q99801 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NKX3-1Q99801 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.11□□□□□ -2.07
NKX3-1Q99801 RNU6-944P-201ENST00000364023 107 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
NKX3-1Q99801 RNU6-784P-201ENST00000384330 106 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 Y_RNA.482-201ENST00000384377 111 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 RNU6-1274P-201ENST00000384557 107 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AL591034.2-201ENST00000402839 359 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 RNU6-174P-201ENST00000410406 106 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 RNA5SP508-201ENST00000411327 119 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.11□□□□□ -2.07
NKX3-1Q99801 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.11□□□□□ -2.07
NKX3-1Q99801 DAP3P1-201ENST00000441522 278 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AC093019.1-201ENST00000443135 252 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 EEF1B2P7-201ENST00000451177 676 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 snoU13.6-201ENST00000458785 104 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.11□□□□□ -2.07
NKX3-1Q99801 AC114801.2-201ENST00000503825 781 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AC016632.1-201ENST00000503994 196 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AC021146.2-201ENST00000504736 556 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.11□□□□□ -2.07
NKX3-1Q99801 RNA5SP384-201ENST00000516615 116 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AC115990.1-201ENST00000526957 301 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.11□□□□□ -2.07
NKX3-1Q99801 APOOP3-201ENST00000536787 586 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 PRELID2P1-201ENST00000552837 301 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AC027176.1-201ENST00000560204 514 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.11□□□□□ -2.07
NKX3-1Q99801 AC109446.1-201ENST00000566172 220 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AL355375.2-201ENST00000574825 175 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AL034555.1-201ENST00000604816 211 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AL356157.2-201ENST00000605122 111 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 LARP7P1-201ENST00000605576 316 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AP000654.2-201ENST00000605633 586 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.11□□□□□ -2.07
NKX3-1Q99801 MTND4LP32-201ENST00000636111 270 ntBASIC2.11□□□□□ -2.07
NKX3-1Q99801 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
NKX3-1Q99801 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
NKX3-1Q99801 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
NKX3-1Q99801 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
NKX3-1Q99801 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.1□□□□□ -2.07
NKX3-1Q99801 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
NKX3-1Q99801 Y_RNA.58-201ENST00000362807 102 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 Y_RNA.154-201ENST00000363624 102 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 RNY3P1-201ENST00000365085 102 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 RNY3-201ENST00000365484 102 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 Y_RNA.490-201ENST00000384413 102 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 Y_RNA.533-201ENST00000384596 114 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 RNU6-331P-201ENST00000384724 107 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 SNORA80E-201ENST00000384744 137 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 MIR487A-201ENST00000385009 80 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 SNORA26.3-201ENST00000391119 136 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 SNORA12-201ENST00000391162 147 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 RNU6-370P-201ENST00000411008 104 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 AC003685.2-201ENST00000422795 395 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.1□□□□□ -2.07
NKX3-1Q99801 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.1□□□□□ -2.07
NKX3-1Q99801 AF186996.7-201ENST00000492781 209 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.1□□□□□ -2.07
NKX3-1Q99801 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.1□□□□□ -2.07
NKX3-1Q99801 ACA59.1-201ENST00000515966 143 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 AC023824.2-201ENST00000566185 400 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 FRG2DP-202ENST00000566967 323 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.1□□□□□ -2.07
NKX3-1Q99801 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.1□□□□□ -2.07
NKX3-1Q99801 MIR4658-201ENST00000584344 65 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 Z98751.3-201ENST00000604447 521 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 AC009318.2-201ENST00000610917 651 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 AC025253.1-201ENST00000613623 543 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 MIR6817-201ENST00000615588 66 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 HMGB1P24-202ENST00000615653 685 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 AL008636.1-201ENST00000625038 1018 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 MIR1302-1-201ENST00000637932 143 ntBASIC2.1□□□□□ -2.07
NKX3-1Q99801 RNU5B-2P-201ENST00000363036 113 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 RNU1-23P-201ENST00000363361 144 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 SNORA67.1-201ENST00000364749 141 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 SNORA75.4-201ENST00000391278 119 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.09□□□□□ -2.07
NKX3-1Q99801 Z82188.1-201ENST00000436709 154 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.09□□□□□ -2.07
NKX3-1Q99801 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.09□□□□□ -2.07
NKX3-1Q99801 RPS3P1-201ENST00000456781 192 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 RNU7-26P-201ENST00000458980 63 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 Y_RNA.635-201ENST00000459041 101 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 RPL23AP75-201ENST00000491601 451 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.09□□□□□ -2.07
NKX3-1Q99801 AC145146.1-201ENST00000496370 254 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 FGF7P4-201ENST00000509595 295 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms