Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.5□□□□□ -1.85
SMC1BQ8NDV3 MRPS36P4-201ENST00000534436 298 ntBASIC3.5□□□□□ -1.85
SMC1BQ8NDV3 AL162373.1-201ENST00000620433 407 ntBASIC3.5□□□□□ -1.85
SMC1BQ8NDV3 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.5□□□□□ -1.85
SMC1BQ8NDV3 SCARNA4-201ENST00000629045 128 ntBASIC3.5□□□□□ -1.85
SMC1BQ8NDV3 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.5□□□□□ -1.85
SMC1BQ8NDV3 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.5□□□□□ -1.85
SMC1BQ8NDV3 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 AC092268.1-201ENST00000342691 405 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 RNU6-799P-201ENST00000363567 107 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 RNA5SP99-201ENST00000364020 114 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 Y_RNA.405-201ENST00000383979 100 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 Y_RNA.424-201ENST00000384063 103 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 Y_RNA.451-201ENST00000384200 100 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 Y_RNA.524-201ENST00000384564 100 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 Y_RNA.561-201ENST00000384694 100 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 SNORA69.1-201ENST00000390904 137 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 SNORA12.2-201ENST00000391040 156 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 AC113618.1-201ENST00000416747 285 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 AL358453.1-201ENST00000422522 250 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 AC078809.1-201ENST00000427601 140 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 AC244670.1-201ENST00000436879 112 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 MTND5P22-201ENST00000458380 195 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 snoU13.30-201ENST00000458951 104 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 RPS27P26-201ENST00000494583 239 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 AC021146.2-201ENST00000504736 556 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 RNA5SP458-201ENST00000516188 119 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 RPS15AP11-201ENST00000594193 385 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 RPL23AP78-201ENST00000599928 470 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 AC136443.5-201ENST00000603741 370 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 GABRG2-229ENST00000641017 3628 ntBASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SMC1BQ8NDV3 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 AP000560.1-201ENST00000624150 1937 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 MIR628-201ENST00000385229 95 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 SAR1AP2-201ENST00000392696 594 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 MIR190B-201ENST00000401119 79 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 AL133475.1-201ENST00000404414 305 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 RNU6-985P-201ENST00000410182 104 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 MTCO3P29-201ENST00000432119 779 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 OSTCP8-201ENST00000445117 448 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 AL353752.1-201ENST00000454946 260 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 AC091179.1-201ENST00000461606 579 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 RPL23AP75-201ENST00000491601 451 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 RNA5SP148-201ENST00000516527 94 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 MIR2276-201ENST00000516886 89 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 DNAJC8P1-201ENST00000554535 372 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 RPL23AP88-201ENST00000605759 454 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 AL359198.2-201ENST00000611836 194 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 AC137590.2-201ENST00000619709 240 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 MIR4272-201ENST00000635924 64 ntBASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SMC1BQ8NDV3 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 SNORD114-19-201ENST00000363072 75 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 MIR1289-2-201ENST00000408360 111 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 RNU6-101P-201ENST00000410323 104 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 AC004383.1-201ENST00000438135 289 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 RNU7-169P-201ENST00000459456 61 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 RN7SL283P-201ENST00000489055 303 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 MTND4LP22-201ENST00000508209 276 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 RNU6-764P-201ENST00000516396 105 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 SNORA40.14-201ENST00000516543 86 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 AC021231.3-201ENST00000558497 370 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 AC006600.1-201ENST00000572529 153 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 VN1R91P-201ENST00000594377 169 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 AC016727.2-201ENST00000603988 621 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 SNORD58B-201ENST00000607313 66 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 uc_338.14-201ENST00000613162 166 ntBASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.47□□□□□ -1.85
SMC1BQ8NDV3 AC091564.4-201ENST00000533934 2194 ntBASIC3.46□□□□□ -1.85
SMC1BQ8NDV3 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.46□□□□□ -1.86
SMC1BQ8NDV3 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SMC1BQ8NDV3 MIR148B-201ENST00000362252 99 ntBASIC3.46□□□□□ -1.86
SMC1BQ8NDV3 Y_RNA.4-201ENST00000362333 112 ntBASIC3.46□□□□□ -1.86
SMC1BQ8NDV3 SNORA9.2-201ENST00000365361 133 ntBASIC3.46□□□□□ -1.86
SMC1BQ8NDV3 Y_RNA.389-201ENST00000383924 113 ntBASIC3.46□□□□□ -1.86
SMC1BQ8NDV3 SNORA29-201ENST00000384183 140 ntBASIC3.46□□□□□ -1.86
SMC1BQ8NDV3 Y_RNA.455-201ENST00000384230 98 ntBASIC3.46□□□□□ -1.86
SMC1BQ8NDV3 Y_RNA.526-201ENST00000384572 110 ntBASIC3.46□□□□□ -1.86
SMC1BQ8NDV3 Y_RNA.527-201ENST00000384573 102 ntBASIC3.46□□□□□ -1.86
SMC1BQ8NDV3 MTCO3P19-201ENST00000415864 321 ntBASIC3.46□□□□□ -1.86
SMC1BQ8NDV3 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms