Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS53Q5VIR6 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS53Q5VIR6 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS53Q5VIR6 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.16□□□□□ -1.9
VPS53Q5VIR6 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS53Q5VIR6 SNORD58B-201ENST00000607313 66 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS53Q5VIR6 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.15□□□□□ -1.9
VPS53Q5VIR6 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
VPS53Q5VIR6 RNU6-1280P-201ENST00000365211 107 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 SNORD116-20-201ENST00000384529 92 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.527-201ENST00000384573 102 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 MIR625-201ENST00000385047 85 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 RNU6-700P-201ENST00000391043 107 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VPS53Q5VIR6 AC107626.1-201ENST00000471084 183 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 RPL23AP70-201ENST00000483361 460 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 MRPL42P6-201ENST00000486397 371 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS53Q5VIR6 SCARNA17.1-201ENST00000516211 143 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 SCARNA17.2-201ENST00000516334 143 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS53Q5VIR6 AC004584.2-201ENST00000570407 410 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 AC104695.3-201ENST00000604052 296 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 AC091152.3-201ENST00000604227 325 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS53Q5VIR6 SCARNA17.4-201ENST00000614296 143 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS53Q5VIR6 MIR4272-201ENST00000635924 64 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 AC241585.2-209ENST00000638217 143 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 AC010329.5-201ENST00000623497 2174 ntBASIC3.15□□□□□ -1.91
VPS53Q5VIR6 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS53Q5VIR6 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS53Q5VIR6 RNU4-42P-201ENST00000364738 142 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.510-201ENST00000384511 114 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 FTH1P15-201ENST00000406984 280 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 MTCYBP2-201ENST00000407745 171 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 RNU6-1245P-201ENST00000411130 106 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 AC007098.1-201ENST00000420122 367 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 PTGES3P4-201ENST00000426243 356 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 ARL5AP4-201ENST00000430731 512 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 AC243964.1-201ENST00000441814 261 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 AL441985.1-201ENST00000457727 251 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 RN7SKP210-201ENST00000459176 261 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS53Q5VIR6 SNORA40.14-201ENST00000516543 86 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 AL356157.2-201ENST00000605122 111 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS53Q5VIR6 HAUS6P2-201ENST00000433254 2404 ntBASIC3.14□□□□□ -1.91
VPS53Q5VIR6 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS53Q5VIR6 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 RNU6-859P-201ENST00000362728 107 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 RNU6-1309P-201ENST00000363305 108 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.123-201ENST00000363338 102 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 RNU6-463P-201ENST00000384340 107 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 MIR147B-201ENST00000390185 80 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AC074117.2-201ENST00000417130 397 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AC063976.3-201ENST00000426849 329 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AL353752.1-201ENST00000454946 260 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 RPS27AP9-201ENST00000477681 438 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AC144568.1-201ENST00000520139 137 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AL590705.4-201ENST00000532209 134 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AC113195.1-201ENST00000579952 141 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 MIR3616-201ENST00000584070 92 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AC016727.2-201ENST00000603988 621 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AC024581.2-201ENST00000619986 252 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AC138305.3-201ENST00000624988 240 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 AC091812.1-201ENST00000432235 1948 ntBASIC3.13□□□□□ -1.91
VPS53Q5VIR6 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS53Q5VIR6 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS53Q5VIR6 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS53Q5VIR6 SET-203ENST00000372688 801 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS53Q5VIR6 RNA5SP210-201ENST00000391034 120 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
VPS53Q5VIR6 RNU2-25P-201ENST00000411041 191 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AC092427.1-202ENST00000430569 476 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AC007969.2-201ENST00000441891 191 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AL513124.1-201ENST00000450410 614 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS53Q5VIR6 MED28P2-201ENST00000475771 317 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 SRIP1-201ENST00000489235 288 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AC093852.1-201ENST00000503587 266 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS53Q5VIR6 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms