Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU5F-2P-201ENST00000516066 82 ntBASIC2.9□□□□□ -1.95
PTCHD3Q3KNS1 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.9□□□□□ -1.95
PTCHD3Q3KNS1 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
PTCHD3Q3KNS1 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.9□□□□□ -1.95
PTCHD3Q3KNS1 MIR5188-201ENST00000583467 113 ntBASIC2.9□□□□□ -1.95
PTCHD3Q3KNS1 AC073410.2-201ENST00000603240 332 ntBASIC2.9□□□□□ -1.95
PTCHD3Q3KNS1 AC093732.2-201ENST00000607950 274 ntBASIC2.9□□□□□ -1.95
PTCHD3Q3KNS1 U2.1-201ENST00000618978 145 ntBASIC2.9□□□□□ -1.95
PTCHD3Q3KNS1 AC000403.1-201ENST00000613696 3585 ntBASIC2.9□□□□□ -1.95
PTCHD3Q3KNS1 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 SNORD115-8-201ENST00000363856 82 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 RNU4-56P-201ENST00000364700 142 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 SNORD115-38-201ENST00000365037 82 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 SNORD14.1-201ENST00000365609 90 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 Y_RNA.485-201ENST00000384395 102 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 RNU1-57P-201ENST00000384491 166 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 MIR32-201ENST00000384965 70 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 AC113618.1-201ENST00000416747 285 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 HMGN1P10-201ENST00000474557 553 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 AC090525.1-201ENST00000479116 478 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 HMGB1P35-201ENST00000503360 598 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 RNA5SP385-201ENST00000515947 110 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 SNORA31.6-201ENST00000516241 130 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 AC006600.1-201ENST00000572529 153 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 AC090617.3-201ENST00000573670 475 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 AL078605.1-201ENST00000603529 500 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 Z98751.3-201ENST00000604447 521 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 AL033523.1-201ENST00000605153 153 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 AC005520.5-201ENST00000613926 164 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 AC002064.3-201ENST00000623448 346 ntBASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.89□□□□□ -1.95
PTCHD3Q3KNS1 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 OR56A5-201ENST00000340110 738 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 RNU6-212P-201ENST00000362642 104 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 Y_RNA.106-201ENST00000363189 100 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 RNU6-1210P-201ENST00000363775 107 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 SNORA80A-201ENST00000363922 136 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 U3.13-201ENST00000364804 214 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 Y_RNA.459-201ENST00000384251 102 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 U8.10-201ENST00000384260 133 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 MIR186-201ENST00000384988 86 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 RNU6-823P-201ENST00000391042 103 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 RNU6-101P-201ENST00000410323 104 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 AC114482.1-201ENST00000418010 247 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 MICF-203ENST00000432679 129 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 AC244505.4-201ENST00000434905 287 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 SSXP5-201ENST00000443473 287 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 AC112771.1-201ENST00000463581 102 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 SEM1P1-201ENST00000506694 209 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 RNA5SP112-201ENST00000515937 99 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 CYP4A27P-201ENST00000567218 190 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 AL138963.2-201ENST00000605137 226 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 AL132822.1-201ENST00000617063 513 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 SNORD98-201ENST00000636377 67 ntBASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
PTCHD3Q3KNS1 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 AC010329.5-201ENST00000623497 2174 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 Y_RNA.40-201ENST00000362645 93 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 RNU6-655P-201ENST00000362858 107 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 SNORA63.7-201ENST00000365579 123 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 Y_RNA.389-201ENST00000383924 113 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 SNORA36A-201ENST00000384221 132 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 Y_RNA.527-201ENST00000384573 102 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 CBX3P9-201ENST00000402326 552 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 AC096644.2-201ENST00000429278 159 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 Z98742.2-201ENST00000431564 187 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 RNU7-169P-201ENST00000459456 61 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 MRPS36P2-201ENST00000512569 299 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 SNORA31.26-201ENST00000517250 137 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 MIR3923-201ENST00000579521 83 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 AC113195.1-201ENST00000579952 141 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 MIR4506-201ENST00000584693 77 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 MIR4765-201ENST00000585007 77 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 AC008739.2-201ENST00000597006 317 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 MIR7106-201ENST00000612419 65 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.87□□□□□ -1.95
PTCHD3Q3KNS1 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
PTCHD3Q3KNS1 AL035425.3-201ENST00000564206 4996 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 180 ms