Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 RNU6-622P-201ENST00000384272 103 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 MIR520F-201ENST00000384824 87 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 RNU2-23P-201ENST00000410545 195 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 RNA5SP504-201ENST00000410676 117 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC-0.28□□□□□ -2.45
CUX1P39880 RPS15AP10-201ENST00000432472 382 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 MTND2P21-201ENST00000436242 1042 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC-0.28□□□□□ -2.45
CUX1P39880 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC-0.28□□□□□ -2.45
CUX1P39880 MTND1P9-201ENST00000453775 944 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 AC074198.2-201ENST00000508153 258 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC-0.28□□□□□ -2.45
CUX1P39880 AC110760.3-202ENST00000515177 371 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC-0.28□□□□□ -2.45
CUX1P39880 RNY1P8-201ENST00000383970 114 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 RNA5SP390-201ENST00000410191 113 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 AC068533.2-201ENST00000411872 306 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 MTND1P20-201ENST00000430341 950 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC-0.28□□□□□ -2.45
CUX1P39880 RPL23AP50-201ENST00000434149 455 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 AC020550.1-201ENST00000447385 163 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 AF038458.1-201ENST00000588406 262 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC-0.28□□□□□ -2.45
CUX1P39880 AC136475.10-201ENST00000620253 385 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 AC009268.2-201ENST00000621925 457 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 AL157786.1-207ENST00000627771 695 ntBASIC-0.28□□□□□ -2.45
CUX1P39880 AL390237.1-201ENST00000404226 1415 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 RNU6-674P-201ENST00000363831 107 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 SUGT1P1-201ENST00000379514 476 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 RNU6-815P-201ENST00000384080 113 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 SNORD116-13-201ENST00000384408 92 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 MIR140-201ENST00000385282 100 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 RNU6-952P-201ENST00000391164 108 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 AL590084.2-201ENST00000401481 382 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 C1DP2-201ENST00000418167 426 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 MTND4LP11-201ENST00000422184 280 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 MTCO2P5-201ENST00000422621 426 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 MRPS18CP6-201ENST00000423587 223 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 C1DP4-201ENST00000455429 424 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 AC022364.2-201ENST00000457963 554 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC-0.29□□□□□ -2.46
CUX1P39880 AC116347.2-201ENST00000514912 523 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 RNU6-863P-201ENST00000515989 104 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 RNU6-922P-201ENST00000516753 99 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC-0.29□□□□□ -2.46
CUX1P39880 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC-0.29□□□□□ -2.46
CUX1P39880 AC078938.1-201ENST00000620993 318 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 AP000943.4-201ENST00000622912 357 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 MIR3529-201ENST00000637713 78 ntBASIC-0.29□□□□□ -2.46
CUX1P39880 MIR340-201ENST00000362125 95 ntBASIC-0.3□□□□□ -2.46
CUX1P39880 Y_RNA.18-201ENST00000362461 102 ntBASIC-0.3□□□□□ -2.46
CUX1P39880 SNORA4.2-201ENST00000365313 147 ntBASIC-0.3□□□□□ -2.46
CUX1P39880 MIR518A1-201ENST00000385068 85 ntBASIC-0.3□□□□□ -2.46
CUX1P39880 TRIM60P5Y-201ENST00000413946 574 ntBASIC-0.3□□□□□ -2.46
CUX1P39880 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC-0.3□□□□□ -2.46
CUX1P39880 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC-0.3□□□□□ -2.46
CUX1P39880 HMGB1P29-201ENST00000505659 499 ntBASIC-0.3□□□□□ -2.46
CUX1P39880 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.3□□□□□ -2.46
CUX1P39880 RNU6-572P-201ENST00000516724 80 ntBASIC-0.3□□□□□ -2.46
CUX1P39880 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC-0.3□□□□□ -2.46
CUX1P39880 AL391001.1-201ENST00000602747 715 ntBASIC-0.3□□□□□ -2.46
CUX1P39880 AC096586.1-201ENST00000610267 561 ntBASIC-0.3□□□□□ -2.46
CUX1P39880 MTND4P5-201ENST00000435821 1374 ntBASIC-0.3□□□□□ -2.46
CUX1P39880 RNU4-9P-201ENST00000364951 139 ntBASIC-0.31□□□□□ -2.46
CUX1P39880 RNU6-487P-201ENST00000365430 104 ntBASIC-0.31□□□□□ -2.46
CUX1P39880 MIR644A-201ENST00000385262 94 ntBASIC-0.31□□□□□ -2.46
CUX1P39880 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC-0.31□□□□□ -2.46
CUX1P39880 RN7SKP266-201ENST00000410232 287 ntBASIC-0.31□□□□□ -2.46
CUX1P39880 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC-0.31□□□□□ -2.46
CUX1P39880 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC-0.31□□□□□ -2.46
CUX1P39880 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC-0.31□□□□□ -2.46
CUX1P39880 LAMTOR3P2-201ENST00000504479 232 ntBASIC-0.31□□□□□ -2.46
CUX1P39880 RPF2P2-201ENST00000504693 896 ntBASIC-0.31□□□□□ -2.46
CUX1P39880 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC-0.31□□□□□ -2.46
CUX1P39880 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC-0.31□□□□□ -2.46
CUX1P39880 SCARNA8-201ENST00000515924 131 ntBASIC-0.31□□□□□ -2.46
CUX1P39880 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC-0.31□□□□□ -2.46
CUX1P39880 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC-0.31□□□□□ -2.46
CUX1P39880 AC025449.1-201ENST00000603896 529 ntBASIC-0.31□□□□□ -2.46
CUX1P39880 SNORA42.1-201ENST00000363515 137 ntBASIC-0.32□□□□□ -2.46
CUX1P39880 RNU6-819P-201ENST00000364116 107 ntBASIC-0.32□□□□□ -2.46
CUX1P39880 MIR653-201ENST00000385279 96 ntBASIC-0.32□□□□□ -2.46
CUX1P39880 VPS26BP1-201ENST00000417155 755 ntBASIC-0.32□□□□□ -2.46
CUX1P39880 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC-0.32□□□□□ -2.46
CUX1P39880 AC073261.1-201ENST00000429409 121 ntBASIC-0.32□□□□□ -2.46
CUX1P39880 LARP1BP3-201ENST00000437229 869 ntBASIC-0.32□□□□□ -2.46
CUX1P39880 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC-0.32□□□□□ -2.46
CUX1P39880 MTATP6P30-201ENST00000443540 664 ntBASIC-0.32□□□□□ -2.46
CUX1P39880 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC-0.32□□□□□ -2.46
CUX1P39880 RNU7-34P-201ENST00000459394 64 ntBASIC-0.32□□□□□ -2.46
CUX1P39880 MED28P2-201ENST00000475771 317 ntBASIC-0.32□□□□□ -2.46
CUX1P39880 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC-0.32□□□□□ -2.46
CUX1P39880 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC-0.32□□□□□ -2.46
CUX1P39880 AL592221.1-201ENST00000605266 382 ntBASIC-0.32□□□□□ -2.46
CUX1P39880 TUG1_2.1-201ENST00000614234 87 ntBASIC-0.32□□□□□ -2.46
CUX1P39880 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC-0.32□□□□□ -2.46
CUX1P39880 RNU6-177P-201ENST00000411257 104 ntBASIC-0.33□□□□□ -2.46
CUX1P39880 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC-0.33□□□□□ -2.46
CUX1P39880 AL353777.1-201ENST00000425552 326 ntBASIC-0.33□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 148.8 ms