Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.58□□□□□ -2
SHMT1P34896 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.58□□□□□ -2
SHMT1P34896 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.58□□□□□ -2
SHMT1P34896 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.58□□□□□ -2
SHMT1P34896 SNORD5.1-201ENST00000458800 75 ntBASIC2.58□□□□□ -2
SHMT1P34896 snoU13.14-201ENST00000459372 104 ntBASIC2.58□□□□□ -2
SHMT1P34896 RNU6-277P-201ENST00000516272 106 ntBASIC2.58□□□□□ -2
SHMT1P34896 RNA5SP200-201ENST00000516360 103 ntBASIC2.58□□□□□ -2
SHMT1P34896 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.58□□□□□ -2
SHMT1P34896 AC016727.1-205ENST00000605437 569 ntBASIC2.58□□□□□ -2
SHMT1P34896 MIR1302-1-201ENST00000637932 143 ntBASIC2.58□□□□□ -2
SHMT1P34896 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.58□□□□□ -2
SHMT1P34896 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.57□□□□□ -2
SHMT1P34896 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SHMT1P34896 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
SHMT1P34896 AC080100.1-201ENST00000624239 5356 ntBASIC2.57□□□□□ -2
SHMT1P34896 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SHMT1P34896 MIR6073-201ENST00000352083 89 ntBASIC2.57□□□□□ -2
SHMT1P34896 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.57□□□□□ -2
SHMT1P34896 RNA5SP432-201ENST00000362480 116 ntBASIC2.57□□□□□ -2
SHMT1P34896 RNU6-1285P-201ENST00000363480 105 ntBASIC2.57□□□□□ -2
SHMT1P34896 RNU6-596P-201ENST00000365395 98 ntBASIC2.57□□□□□ -2
SHMT1P34896 RNU6-142P-201ENST00000384019 107 ntBASIC2.57□□□□□ -2
SHMT1P34896 RN7SKP61-201ENST00000410642 295 ntBASIC2.57□□□□□ -2
SHMT1P34896 EIF1AXP1-201ENST00000419267 435 ntBASIC2.57□□□□□ -2
SHMT1P34896 AC073901.1-201ENST00000462471 408 ntBASIC2.57□□□□□ -2
SHMT1P34896 SNRPGP7-201ENST00000469016 106 ntBASIC2.57□□□□□ -2
SHMT1P34896 MTND4P17-201ENST00000470444 350 ntBASIC2.57□□□□□ -2
SHMT1P34896 UBL5P3-201ENST00000475112 231 ntBASIC2.57□□□□□ -2
SHMT1P34896 SNORA25.11-201ENST00000515935 105 ntBASIC2.57□□□□□ -2
SHMT1P34896 SCARNA16.3-201ENST00000516595 184 ntBASIC2.57□□□□□ -2
SHMT1P34896 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.57□□□□□ -2
SHMT1P34896 RAB11AP2-201ENST00000545905 639 ntBASIC2.57□□□□□ -2
SHMT1P34896 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.57□□□□□ -2
SHMT1P34896 HSPE1P4-201ENST00000550617 308 ntBASIC2.57□□□□□ -2
SHMT1P34896 MIR3199-1-201ENST00000582434 88 ntBASIC2.57□□□□□ -2
SHMT1P34896 MIR3616-201ENST00000584070 92 ntBASIC2.57□□□□□ -2
SHMT1P34896 AL356575.1-201ENST00000603008 283 ntBASIC2.57□□□□□ -2
SHMT1P34896 AC018462.2-201ENST00000605375 395 ntBASIC2.57□□□□□ -2
SHMT1P34896 MIR7843-201ENST00000622274 79 ntBASIC2.57□□□□□ -2
SHMT1P34896 AP000560.1-201ENST00000624150 1937 ntBASIC2.57□□□□□ -2
SHMT1P34896 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.57□□□□□ -2
SHMT1P34896 AC080128.1-201ENST00000474389 1917 ntBASIC2.56□□□□□ -2
SHMT1P34896 RNU6-655P-201ENST00000362858 107 ntBASIC2.56□□□□□ -2
SHMT1P34896 EIF4EP4-201ENST00000424916 578 ntBASIC2.56□□□□□ -2
SHMT1P34896 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.56□□□□□ -2
SHMT1P34896 Z82205.1-201ENST00000428456 297 ntBASIC2.56□□□□□ -2
SHMT1P34896 USP9YP30-201ENST00000430729 455 ntBASIC2.56□□□□□ -2
SHMT1P34896 HMGN2P3-201ENST00000433603 273 ntBASIC2.56□□□□□ -2
SHMT1P34896 AC244670.1-201ENST00000436879 112 ntBASIC2.56□□□□□ -2
SHMT1P34896 HMGN2P5-201ENST00000436882 273 ntBASIC2.56□□□□□ -2
SHMT1P34896 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.56□□□□□ -2
SHMT1P34896 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.56□□□□□ -2
SHMT1P34896 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.56□□□□□ -2
SHMT1P34896 RPL30P1-201ENST00000488676 339 ntBASIC2.56□□□□□ -2
SHMT1P34896 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.56□□□□□ -2
SHMT1P34896 AC104564.1-201ENST00000493028 407 ntBASIC2.56□□□□□ -2
SHMT1P34896 AC016632.1-201ENST00000503994 196 ntBASIC2.56□□□□□ -2
SHMT1P34896 AC022447.4-201ENST00000504053 364 ntBASIC2.56□□□□□ -2
SHMT1P34896 AC026782.1-201ENST00000512952 449 ntBASIC2.56□□□□□ -2
SHMT1P34896 Y_RNA.708-201ENST00000516950 96 ntBASIC2.56□□□□□ -2
SHMT1P34896 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.56□□□□□ -2
SHMT1P34896 AC007375.1-201ENST00000554513 578 ntBASIC2.56□□□□□ -2
SHMT1P34896 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.56□□□□□ -2
SHMT1P34896 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.56□□□□□ -2
SHMT1P34896 AL117336.2-201ENST00000602435 335 ntBASIC2.56□□□□□ -2
SHMT1P34896 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.56□□□□□ -2
SHMT1P34896 PISRT1.1-201ENST00000616930 107 ntBASIC2.56□□□□□ -2
SHMT1P34896 AC112487.2-201ENST00000637950 304 ntBASIC2.56□□□□□ -2
SHMT1P34896 MTND4P27-201ENST00000450813 1354 ntBASIC2.56□□□□□ -2
SHMT1P34896 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.55□□□□□ -2
SHMT1P34896 AC092268.1-201ENST00000342691 405 ntBASIC2.55□□□□□ -2
SHMT1P34896 Y_RNA.123-201ENST00000363338 102 ntBASIC2.55□□□□□ -2
SHMT1P34896 RNU6-1210P-201ENST00000363775 107 ntBASIC2.55□□□□□ -2
SHMT1P34896 RNU6-461P-201ENST00000364195 107 ntBASIC2.55□□□□□ -2
SHMT1P34896 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
SHMT1P34896 RNU6-784P-201ENST00000384330 106 ntBASIC2.55□□□□□ -2
SHMT1P34896 MIR218-1-201ENST00000384999 110 ntBASIC2.55□□□□□ -2
SHMT1P34896 MIR504-201ENST00000385065 83 ntBASIC2.55□□□□□ -2
SHMT1P34896 AL591034.2-201ENST00000402839 359 ntBASIC2.55□□□□□ -2
SHMT1P34896 SNORA11.4-201ENST00000408823 129 ntBASIC2.55□□□□□ -2
SHMT1P34896 RNU6-1050P-201ENST00000410388 107 ntBASIC2.55□□□□□ -2
SHMT1P34896 EIF4EP2-201ENST00000422816 654 ntBASIC2.55□□□□□ -2
SHMT1P34896 RPL30P4-201ENST00000429309 333 ntBASIC2.55□□□□□ -2
SHMT1P34896 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.55□□□□□ -2
SHMT1P34896 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.55□□□□□ -2
SHMT1P34896 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.55□□□□□ -2
SHMT1P34896 AC080013.2-201ENST00000460866 323 ntBASIC2.55□□□□□ -2
SHMT1P34896 RPL23AP70-201ENST00000483361 460 ntBASIC2.55□□□□□ -2
SHMT1P34896 AC023141.11-201ENST00000508864 202 ntBASIC2.55□□□□□ -2
SHMT1P34896 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.55□□□□□ -2
SHMT1P34896 RNU6-559P-201ENST00000516151 98 ntBASIC2.55□□□□□ -2
SHMT1P34896 RNU2-53P-201ENST00000516257 147 ntBASIC2.55□□□□□ -2
SHMT1P34896 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.55□□□□□ -2
SHMT1P34896 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.55□□□□□ -2
SHMT1P34896 AC016256.1-201ENST00000547971 354 ntBASIC2.55□□□□□ -2
SHMT1P34896 AL355375.2-201ENST00000574825 175 ntBASIC2.55□□□□□ -2
SHMT1P34896 MIR5194-201ENST00000582634 120 ntBASIC2.55□□□□□ -2
SHMT1P34896 MIR4273-201ENST00000582824 84 ntBASIC2.55□□□□□ -2
SHMT1P34896 MIR5690-201ENST00000583739 73 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms