Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC092794.1-201ENST00000612734 582 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC002553.4-201ENST00000616896 331 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC100810.6-201ENST00000638068 285 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC092881.1-201ENST00000638218 2733 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 ZNF720P1-201ENST00000562403 1939 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 AC005336.3-201ENST00000623833 2679 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 Y_RNA.100-201ENST00000363141 102 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 RNU6-1317P-201ENST00000364582 104 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 Y_RNA.414-201ENST00000384011 101 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 RNU6-214P-201ENST00000384130 107 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 RN7SKP61-201ENST00000410642 295 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 AP000275.1-201ENST00000411943 390 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 VN1R36P-201ENST00000414936 291 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 AC244670.1-201ENST00000436879 112 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 FGF7P6-202ENST00000451282 293 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 RPS29P27-201ENST00000463711 170 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 AC018868.1-201ENST00000491307 315 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 HMGB1P35-201ENST00000503360 598 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 SNORA31.16-201ENST00000516773 139 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 RNU6-612P-201ENST00000516909 102 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 RNU6-1314P-201ENST00000517139 104 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 RNU2-19P-201ENST00000517288 84 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 AC115990.1-201ENST00000526957 301 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 HSPE1P4-201ENST00000550617 308 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 SCOCP1-201ENST00000554676 349 ntBASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF3Q9UKF6 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 Y_RNA.157-201ENST00000363638 102 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 RNU6-944P-201ENST00000364023 107 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 RNU6-1106P-201ENST00000390845 107 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 UBE2V1P4-201ENST00000425374 344 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 AL445646.1-201ENST00000431784 216 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 NFU1P2-201ENST00000448700 469 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 AC055731.1-201ENST00000474387 401 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 IGKV3-31-201ENST00000523109 329 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 MIR4529-201ENST00000578110 78 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 MIR3672-201ENST00000584290 82 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 MIR4298-201ENST00000584380 73 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 AL670379.2-201ENST00000604983 252 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 AL138726.1-201ENST00000614873 333 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 AC006504.8-201ENST00000621046 635 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 SNORA43.4-201ENST00000629559 138 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 SNORD98-201ENST00000636377 67 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 AL450472.1-202ENST00000637286 180 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 AP000560.1-201ENST00000624150 1937 ntBASIC2.26□□□□□ -2.05
CPSF3Q9UKF6 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 MTND4P5-201ENST00000435821 1374 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AL596028.1-201ENST00000326971 197 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 RNU6-128P-201ENST00000383976 107 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 RNU2-2P-201ENST00000410396 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 RNU6-325P-201ENST00000411132 105 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AL139156.1-201ENST00000412785 841 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AL133396.1-201ENST00000432048 687 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 USP9YP28-201ENST00000435142 589 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 RPL9P9-202ENST00000466501 579 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 TRBVA-201ENST00000498804 316 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AC025465.4-201ENST00000513422 638 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 RNU6-256P-201ENST00000516747 97 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 RN7SKP256-201ENST00000517201 314 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 HSPE1P18-201ENST00000517602 280 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AC026371.1-201ENST00000551867 419 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 SNORA59B-202ENST00000578183 701 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 MIR3942-201ENST00000585264 109 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AL034555.1-201ENST00000604816 211 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AL356157.2-201ENST00000605122 111 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AC018889.1-201ENST00000605372 397 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U2.15-201ENST00000611544 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U2.16-201ENST00000613119 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U2.12-201ENST00000613778 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U2.20-201ENST00000613956 192 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U2.9-201ENST00000615427 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U6atac.1-201ENST00000616025 117 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 245.6 ms