Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC244670.1-201ENST00000436879 112 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 MTND1P1-201ENST00000445453 368 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 AC007677.1-201ENST00000445757 515 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 RNU7-138P-201ENST00000459479 64 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 AC019235.1-201ENST00000503847 207 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 MRPS17P9-201ENST00000511924 393 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 RPL39P5-202ENST00000512505 151 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 AC115990.1-201ENST00000526957 301 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 HSPE1P4-201ENST00000550617 308 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 MIR3618-201ENST00000580330 88 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 AF250324.2-201ENST00000608299 610 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 AL121757.2-201ENST00000611223 313 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 AL132822.1-201ENST00000617063 513 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 AC103705.1-201ENST00000619013 241 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
VPS54Q9P1Q0 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 RNU4-15P-201ENST00000362613 141 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 SNORD115-3-201ENST00000363100 82 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 RNU6-82P-201ENST00000363970 107 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 RNU4-40P-201ENST00000364351 143 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 RNU6-1141P-201ENST00000364520 107 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 RNU6-611P-201ENST00000384276 104 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 MIR518A2-201ENST00000384966 87 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 SNORA26.9-201ENST00000391322 122 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AL512604.1-201ENST00000404812 257 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AL590135.1-201ENST00000422215 156 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AC019205.3-201ENST00000424573 156 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AL589823.1-201ENST00000429577 183 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 SNAP23P1-201ENST00000433229 246 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 IFNA20P-201ENST00000436840 528 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AC016700.2-201ENST00000446011 156 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 PPP1R2P5-201ENST00000457256 603 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 RPL23AP42-201ENST00000471152 471 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AC015911.1-201ENST00000495111 156 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AC091874.1-201ENST00000511402 339 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 SNORA31.16-201ENST00000516773 139 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 RNU6-323P-201ENST00000521915 107 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AC022616.8-201ENST00000533569 253 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 VN1R107P-201ENST00000601784 209 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 SNORD98-201ENST00000636377 67 ntBASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
VPS54Q9P1Q0 RNA5SP276-201ENST00000362580 94 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 MIR504-201ENST00000385065 83 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 SNORA12-201ENST00000391162 147 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AL030996.1-201ENST00000411430 235 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 TIMM9P3-201ENST00000428659 274 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 MIR449C-201ENST00000516047 92 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 RNU6-314P-201ENST00000516574 104 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 RNU6-1069P-201ENST00000516612 133 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AP005597.4-201ENST00000526762 229 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AC024614.2-201ENST00000577584 372 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AL034555.1-201ENST00000604816 211 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AL357078.3-201ENST00000607528 618 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AC092807.2-201ENST00000609367 243 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AC005296.1-201ENST00000616145 209 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 MIR1248-201ENST00000629190 106 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 ZNF702P-202ENST00000434269 1966 ntBASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
VPS54Q9P1Q0 AC008555.8-201ENST00000623602 2168 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 MIR764-201ENST00000390811 85 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 SNORA40.19-201ENST00000390846 128 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 MIR1262-201ENST00000408276 93 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AL590556.1-201ENST00000423231 483 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AC096920.1-201ENST00000423991 241 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 PRELID3BP1-201ENST00000457142 540 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AC145146.1-201ENST00000496370 254 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AC022447.4-201ENST00000504053 364 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 RNU6-1281P-201ENST00000516223 105 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AC025423.5-201ENST00000550230 219 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 MIR5692C1-201ENST00000585309 91 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AC005034.5-201ENST00000604219 466 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AP001836.1-201ENST00000604675 523 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AC018889.1-201ENST00000605372 397 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AC064836.2-201ENST00000609491 462 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms