Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TP73-AS1.1-201ENST00000611447 161 ntBASIC2□□□□□ -2.09
LIME1Q9H400 U4atac.1-201ENST00000618345 95 ntBASIC2□□□□□ -2.09
LIME1Q9H400 AC009033.1-201ENST00000624279 431 ntBASIC2□□□□□ -2.09
LIME1Q9H400 MIR1291-201ENST00000627649 87 ntBASIC2□□□□□ -2.09
LIME1Q9H400 SNORA43.4-201ENST00000629559 138 ntBASIC2□□□□□ -2.09
LIME1Q9H400 AL450472.1-202ENST00000637286 180 ntBASIC2□□□□□ -2.09
LIME1Q9H400 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC1.99□□□□□ -2.09
LIME1Q9H400 ZNF720P1-201ENST00000562403 1939 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.99□□□□□ -2.09
LIME1Q9H400 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
LIME1Q9H400 RNU6-1159P-201ENST00000362933 107 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 RNU6-1252P-201ENST00000363054 104 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 Y_RNA.279-201ENST00000364763 95 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 Y_RNA.338-201ENST00000365320 114 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 RNU6-95P-201ENST00000384697 107 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 AL023284.1-201ENST00000403956 276 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 RNU6-325P-201ENST00000411132 105 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.99□□□□□ -2.09
LIME1Q9H400 AL353752.1-201ENST00000454946 260 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 AMD1P1-201ENST00000457220 922 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 U8.21-201ENST00000459536 136 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 AC090515.1-201ENST00000465295 476 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.99□□□□□ -2.09
LIME1Q9H400 AC022447.4-201ENST00000504053 364 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 AC107222.1-201ENST00000510899 637 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.99□□□□□ -2.09
LIME1Q9H400 RNU5F-2P-201ENST00000516066 82 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 AC087241.2-201ENST00000535801 324 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.99□□□□□ -2.09
LIME1Q9H400 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.99□□□□□ -2.09
LIME1Q9H400 AC018889.1-201ENST00000605372 397 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 AL133215.3-201ENST00000609801 448 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.99□□□□□ -2.09
LIME1Q9H400 MIR5739-201ENST00000619803 80 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 AC009248.2-201ENST00000619826 254 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 AC005336.3-201ENST00000623833 2679 ntBASIC1.99□□□□□ -2.09
LIME1Q9H400 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.99□□□□□ -2.09
LIME1Q9H400 AC092268.1-201ENST00000342691 405 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 Y_RNA.4-201ENST00000362333 112 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 RNU6-227P-201ENST00000362865 103 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 RNU6-1317P-201ENST00000364582 104 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 RNA5SP213-201ENST00000391031 106 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.98□□□□□ -2.09
LIME1Q9H400 AC078809.1-201ENST00000427601 140 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.98□□□□□ -2.09
LIME1Q9H400 MTND1P17-201ENST00000448961 204 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.98□□□□□ -2.09
LIME1Q9H400 MTND1P11-201ENST00000456661 876 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.98□□□□□ -2.09
LIME1Q9H400 RNU7-187P-201ENST00000458985 68 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.98□□□□□ -2.09
LIME1Q9H400 AC096745.1-201ENST00000509945 370 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 AC091874.1-201ENST00000511402 339 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 AC025465.4-201ENST00000513422 638 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 CBX3P7-201ENST00000532876 502 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 AC018630.3-201ENST00000542637 96 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 MIR3136-201ENST00000583498 78 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 MIR4658-201ENST00000584344 65 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 AC009318.2-201ENST00000610917 651 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 DUXAP9-208ENST00000622815 614 ntBASIC1.98□□□□□ -2.09
LIME1Q9H400 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC1.98□□□□□ -2.09
LIME1Q9H400 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
LIME1Q9H400 RNU6-562P-201ENST00000362731 107 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 Y_RNA.301-201ENST00000364990 103 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 RNA5SP240-201ENST00000365355 128 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 SNORD116-11-201ENST00000383882 92 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 RNU6-1274P-201ENST00000384557 107 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 SNORA80E-201ENST00000384744 137 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 RNU2-63P-201ENST00000410792 194 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.97□□□□□ -2.09
LIME1Q9H400 AL590632.1-201ENST00000424289 371 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 AL161788.1-201ENST00000441805 169 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 CYP2C59P-201ENST00000457790 269 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 RNU6-329P-201ENST00000459618 107 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.97□□□□□ -2.09
LIME1Q9H400 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.97□□□□□ -2.09
LIME1Q9H400 HMGB1P35-201ENST00000503360 598 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 AC018710.1-201ENST00000506509 158 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 PTP4A1P4-201ENST00000512479 322 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.97□□□□□ -2.09
LIME1Q9H400 RNU4-49P-201ENST00000516080 140 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 RNU6-1088P-201ENST00000516850 104 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.97□□□□□ -2.09
LIME1Q9H400 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.97□□□□□ -2.09
LIME1Q9H400 AC016256.1-201ENST00000547971 354 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.97□□□□□ -2.09
LIME1Q9H400 MIR4742-201ENST00000581069 85 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.97□□□□□ -2.09
LIME1Q9H400 AC078795.3-201ENST00000602913 472 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 AL049779.4-201ENST00000604500 156 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 AL034555.1-201ENST00000604816 211 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 AL022345.1-201ENST00000607292 135 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.97□□□□□ -2.09
LIME1Q9H400 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.97□□□□□ -2.09
LIME1Q9H400 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
LIME1Q9H400 CASC19-280ENST00000642102 1351 ntBASIC1.97□□□□□ -2.09
LIME1Q9H400 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.09
LIME1Q9H400 MIR29B2-201ENST00000385055 81 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 RPS15AP28-201ENST00000435088 386 ntBASIC1.96□□□□□ -2.1
LIME1Q9H400 IFNA20P-201ENST00000436840 528 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms