Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RPL21P111-201ENST00000418453 477 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 RPS15AP28-201ENST00000435088 386 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 AC011753.1-201ENST00000451001 220 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 MTND1P11-201ENST00000456661 876 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 AMD1P1-201ENST00000457220 922 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 RPL30P12-201ENST00000474666 353 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 RNU4-49P-201ENST00000516080 140 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 IMMP1LP2-201ENST00000552954 492 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 SNRPGP18-201ENST00000553000 214 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 AC078795.3-201ENST00000602913 472 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 AL713866.2-201ENST00000603579 219 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 MIR8076-201ENST00000611401 83 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 MIR6895-201ENST00000613497 78 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 AC008121.3-201ENST00000618726 433 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 ZNF271P-202ENST00000465539 1970 ntBASIC2.21□□□□□ -2.05
CCDC3Q9BQI4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 SNORD114-1-201ENST00000362705 72 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 U8.8-201ENST00000365399 135 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 RNU6-767P-201ENST00000384132 107 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 RNU1-52P-201ENST00000384190 164 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 EIF1AXP1-201ENST00000419267 435 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 HMGN2P3-201ENST00000433603 273 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 HMGN2P5-201ENST00000436882 273 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 DAP3P1-201ENST00000441522 278 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 MTND1P17-201ENST00000448961 204 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 AC016632.1-201ENST00000503994 196 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 AC116353.2-201ENST00000505332 712 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 RNU5F-2P-201ENST00000516066 82 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 RNU6-566P-201ENST00000516790 107 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 SNORA20.3-201ENST00000516880 132 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 SNORA48.11-201ENST00000517015 89 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 RNA5SP454-201ENST00000517231 127 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 AP005902.1-201ENST00000521358 186 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 AC104576.1-201ENST00000524225 88 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 MIR4742-201ENST00000581069 85 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC3Q9BQI4 RNU6-845P-201ENST00000362578 103 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 RNU6-1252P-201ENST00000363054 104 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 RNU6-596P-201ENST00000365395 98 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 MIR29B2-201ENST00000385055 81 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 BTF3L4P2-201ENST00000392798 346 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 RNU2-63P-201ENST00000410792 194 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 RNU6-325P-201ENST00000411132 105 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 AC244670.1-201ENST00000436879 112 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 AL161788.1-201ENST00000441805 169 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 snoU13.23-201ENST00000458863 104 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 HMGB1P35-201ENST00000503360 598 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 RNU6-1088P-201ENST00000516850 104 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 AC018630.3-201ENST00000542637 96 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 AL138963.2-201ENST00000605137 226 ntBASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC3Q9BQI4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 CBX3P1-201ENST00000325243 554 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 MIR21-201ENST00000362134 72 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 RNU6-212P-201ENST00000362642 104 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 Y_RNA.88-201ENST00000363029 99 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 Y_RNA.160-201ENST00000363677 92 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 SNORA25.6-201ENST00000364121 118 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 RNU6-1317P-201ENST00000364582 104 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 RNU6-784P-201ENST00000384330 106 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 MIR221-201ENST00000385135 110 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 RNA5SP181-201ENST00000410246 98 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 NCOR1P3-201ENST00000420479 303 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 AC130509.1-201ENST00000464158 433 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 SNORA25.11-201ENST00000515935 105 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms