Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 Y_RNA.561-201ENST00000384694 100 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 MIR181A2-201ENST00000384863 110 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 RNA5SP390-201ENST00000410191 113 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 RNU2-23P-201ENST00000410545 195 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AL590135.1-201ENST00000422215 156 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AL358453.1-201ENST00000422522 250 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AC019205.3-201ENST00000424573 156 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AC008267.5-201ENST00000424928 265 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AC244670.1-201ENST00000436879 112 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.34□□□□□ -2.03
HOXA1P49639 OSTCP8-201ENST00000445117 448 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AC016700.2-201ENST00000446011 156 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 Z75741.1-201ENST00000446793 314 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AC011753.1-201ENST00000451001 220 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.34□□□□□ -2.03
HOXA1P49639 AC117440.1-201ENST00000474107 571 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AC096576.1-201ENST00000489014 359 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AC090096.1-201ENST00000489168 390 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 RPL23AP75-201ENST00000491601 451 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AC104564.1-201ENST00000493028 407 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AC015911.1-201ENST00000495111 156 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AC021146.2-201ENST00000504736 556 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXA1P49639 AP000889.1-201ENST00000530968 660 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXA1P49639 AL137847.3-201ENST00000611521 109 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 MIR7515-201ENST00000637837 67 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 HAUS6P2-201ENST00000433254 2404 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.34□□□□□ -2.03
HOXA1P49639 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
HOXA1P49639 AL109809.4-201ENST00000603520 2185 ntBASIC2.34□□□□□ -2.04
HOXA1P49639 MTND4P27-201ENST00000450813 1354 ntBASIC2.34□□□□□ -2.04
HOXA1P49639 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.34□□□□□ -2.04
HOXA1P49639 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXA1P49639 AL035425.3-201ENST00000564206 4996 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
HOXA1P49639 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.33□□□□□ -2.04
HOXA1P49639 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXA1P49639 RNU6-490P-201ENST00000362985 107 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 SNORD114-19-201ENST00000363072 75 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 Y_RNA.112-201ENST00000363250 102 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 RNU6-1285P-201ENST00000363480 105 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 RNU6-1141P-201ENST00000364520 107 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 SNORA71.1-201ENST00000364523 117 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 MIR218-1-201ENST00000384999 110 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 U3.26-201ENST00000391236 204 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 RNU6-1156P-201ENST00000410365 100 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 RNA5SP120-201ENST00000410900 112 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXA1P49639 MCFD2P1-201ENST00000417812 300 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXA1P49639 AC018865.2-201ENST00000423631 129 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 AL358075.3-201ENST00000426289 226 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 AC022018.1-201ENST00000430685 241 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.33□□□□□ -2.04
HOXA1P49639 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.33□□□□□ -2.04
HOXA1P49639 AL035666.1-201ENST00000446195 348 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 MTND4P19-201ENST00000446659 478 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HOXA1P49639 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXA1P49639 AL441985.1-201ENST00000457727 251 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 RPL27AP5-201ENST00000469428 449 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 AC074250.1-201ENST00000511117 192 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 RNU6-976P-201ENST00000516086 111 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 RNU6-307P-201ENST00000516743 106 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 RNU6-1137P-201ENST00000517073 99 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 PRELID2P1-201ENST00000552837 301 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 AC105137.2-201ENST00000569073 466 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 MIR5701-3-201ENST00000578890 82 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 MIR1254-2-201ENST00000579553 63 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXA1P49639 MIR3605-201ENST00000583214 100 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 MIR5701-1-201ENST00000585138 82 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 AC092447.9-201ENST00000603395 144 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 CYP2C61P-201ENST00000604072 290 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 AC016925.2-201ENST00000605108 242 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXA1P49639 Y_RNA.812-201ENST00000610788 101 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 Y_RNA.784-201ENST00000613803 101 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 MIR5701-2-201ENST00000615634 82 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 Y_RNA.787-201ENST00000616522 101 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 Y_RNA.780-201ENST00000617336 101 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 Y_RNA.801-201ENST00000619005 101 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 AL159153.1-201ENST00000619688 317 ntBASIC2.33□□□□□ -2.04
HOXA1P49639 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.33□□□□□ -2.04
HOXA1P49639 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.33□□□□□ -2.04
HOXA1P49639 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HOXA1P49639 AC007336.1-201ENST00000576365 3828 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 Z75746.1-201ENST00000440243 2080 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
HOXA1P49639 Y_RNA.28-201ENST00000362554 111 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 RNU6-1286P-201ENST00000383871 107 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 MIR186-201ENST00000384988 86 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 AC007064.1-201ENST00000412238 351 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 AC005326.1-201ENST00000429197 123 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 AC092427.1-202ENST00000430569 476 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 AL513124.1-201ENST00000450410 614 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 OR2AQ1P-201ENST00000451972 200 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXA1P49639 AC087477.1-201ENST00000465747 340 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 167.7 ms