Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.69□□□□□ -2.3
HLA-DMBP28068 MTCO3P29-201ENST00000432119 779 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 AC069257.2-201ENST00000441819 155 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.69□□□□□ -2.3
HLA-DMBP28068 RPL31P3-201ENST00000458430 332 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 snoU13.27-201ENST00000459278 104 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 AC007547.1-201ENST00000462177 490 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 AL163195.1-201ENST00000496941 348 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RBBP4P6-201ENST00000508098 202 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 MTND3P25-201ENST00000509243 135 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 HSPE1P23-201ENST00000509838 286 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 AC116347.2-201ENST00000514912 523 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.69□□□□□ -2.3
HLA-DMBP28068 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.69□□□□□ -2.3
HLA-DMBP28068 AC109446.2-201ENST00000567872 497 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 MIR3664-201ENST00000579074 99 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 AL020996.3-201ENST00000606617 222 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-6P-201ENST00000606623 107 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
HLA-DMBP28068 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 MIR6767-201ENST00000637302 66 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU1-96P-201ENST00000364163 162 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 RNU6-43P-201ENST00000384302 107 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 RNU6-809P-201ENST00000384461 107 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 SNORA26.3-201ENST00000391119 136 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 MTCYBP36-201ENST00000404146 440 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 RNU2-39P-201ENST00000410604 198 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 RPS27AP14-201ENST00000422868 454 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.68□□□□□ -2.3
HLA-DMBP28068 MTND1P20-201ENST00000430341 950 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 RPS24P1-201ENST00000438550 371 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 PRPS1P1-201ENST00000445305 876 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 AL031313.1-201ENST00000448435 256 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 AC132479.1-201ENST00000449160 144 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 RPS27P1-201ENST00000450552 247 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.68□□□□□ -2.3
HLA-DMBP28068 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC0.68□□□□□ -2.3
HLA-DMBP28068 AC010531.2-201ENST00000465012 153 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 AC112204.1-201ENST00000502591 103 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 AC117522.1-201ENST00000509821 380 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC0.68□□□□□ -2.3
HLA-DMBP28068 RN7SKP88-201ENST00000516847 250 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.68□□□□□ -2.3
HLA-DMBP28068 AC109446.1-201ENST00000566172 220 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 MIR4698-201ENST00000577795 80 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 SNORA4-201ENST00000584302 138 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 BNIP3P16-201ENST00000589779 534 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 VN1R107P-201ENST00000601784 209 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 BX284668.6-201ENST00000606899 438 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 AL451064.1-201ENST00000607718 471 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 7SK.8-201ENST00000612110 250 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC0.68□□□□□ -2.3
HLA-DMBP28068 7SK.11-201ENST00000615477 250 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 7SK.13-201ENST00000622040 250 ntBASIC0.68□□□□□ -2.3
HLA-DMBP28068 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.68□□□□□ -2.3
HLA-DMBP28068 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
HLA-DMBP28068 RNY1P14-201ENST00000384426 108 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 RN7SKP61-201ENST00000410642 295 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.67□□□□□ -2.3
HLA-DMBP28068 AC013410.2-201ENST00000422627 201 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 AC000111.3-201ENST00000433478 193 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 AC244670.1-201ENST00000436879 112 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC0.67□□□□□ -2.3
HLA-DMBP28068 AC007395.1-201ENST00000451333 677 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 USP9YP25-201ENST00000457708 443 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.67□□□□□ -2.3
HLA-DMBP28068 FABP5P5-201ENST00000515537 406 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 CYCSP23-201ENST00000519781 313 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 CTHRC1P1-201ENST00000605383 469 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 AL022345.2-201ENST00000606307 135 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 AL353149.1-201ENST00000610667 244 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 PCGEM1.1-201ENST00000613431 131 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 AL139418.1-201ENST00000613613 177 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 AC006927.4-201ENST00000639187 543 ntBASIC0.67□□□□□ -2.3
HLA-DMBP28068 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.67□□□□□ -2.3
HLA-DMBP28068 AC245060.5-201ENST00000610778 3293 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
HLA-DMBP28068 Y_RNA.22-201ENST00000362492 102 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 RNU1-76P-201ENST00000362903 159 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 U3.9-201ENST00000363823 204 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 RNU6-636P-201ENST00000384598 107 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 RNU6-331P-201ENST00000384724 107 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 MIR532-201ENST00000385025 91 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 SNORA40.4-201ENST00000390971 128 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 RNU6-387P-201ENST00000411331 105 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 RNA5SP111-201ENST00000411386 101 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 HMGN1P14-201ENST00000412459 517 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 HIGD1AP15-201ENST00000416198 280 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 AL590135.1-201ENST00000422215 156 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 AC019205.3-201ENST00000424573 156 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 AC078809.1-201ENST00000427601 140 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 AC010975.2-201ENST00000427781 588 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC0.66□□□□□ -2.3
HLA-DMBP28068 AC016700.2-201ENST00000446011 156 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC0.66□□□□□ -2.3
HLA-DMBP28068 snoU13.18-201ENST00000459483 104 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 AC015911.1-201ENST00000495111 156 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 AC010587.1-201ENST00000505809 469 ntBASIC0.66□□□□□ -2.3
HLA-DMBP28068 RNU6-1098P-201ENST00000516772 96 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms