Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 Y_RNA.276-201ENST00000364732 109 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 RPS4XP3-201ENST00000398541 413 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 U3.37-201ENST00000408528 213 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.27□□□□□ -1.89
HLA-DOAP06340 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.27□□□□□ -1.89
HLA-DOAP06340 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.27□□□□□ -1.89
HLA-DOAP06340 AL031659.1-201ENST00000447075 539 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 MTATP6P7-201ENST00000453315 681 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 RPS27AP10-201ENST00000496103 208 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 AC068657.1-201ENST00000520807 306 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.27□□□□□ -1.89
HLA-DOAP06340 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.27□□□□□ -1.89
HLA-DOAP06340 AP003733.2-201ENST00000529409 171 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.27□□□□□ -1.89
HLA-DOAP06340 AC090115.4-201ENST00000609970 188 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 AC130454.1-201ENST00000622948 401 ntBASIC3.27□□□□□ -1.89
HLA-DOAP06340 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DOAP06340 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
HLA-DOAP06340 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.26□□□□□ -1.89
HLA-DOAP06340 MIR26A1-201ENST00000362205 77 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 Y_RNA.14-201ENST00000362415 103 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 RNU6-222P-201ENST00000362438 107 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 Y_RNA.458-201ENST00000384240 102 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.26□□□□□ -1.89
HLA-DOAP06340 MIR888-201ENST00000401186 77 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.26□□□□□ -1.89
HLA-DOAP06340 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.26□□□□□ -1.89
HLA-DOAP06340 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.26□□□□□ -1.89
HLA-DOAP06340 RN7SL75P-201ENST00000461926 281 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.26□□□□□ -1.89
HLA-DOAP06340 RPL30P1-201ENST00000488676 339 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.26□□□□□ -1.89
HLA-DOAP06340 RNU6-581P-201ENST00000516214 105 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 Y_RNA.673-201ENST00000516306 88 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 AC034114.1-201ENST00000520293 285 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.26□□□□□ -1.89
HLA-DOAP06340 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.26□□□□□ -1.89
HLA-DOAP06340 AC010900.2-201ENST00000604508 210 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 AC092628.2-201ENST00000622492 339 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
HLA-DOAP06340 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
HLA-DOAP06340 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.26□□□□□ -1.89
HLA-DOAP06340 Z75746.1-201ENST00000440243 2080 ntBASIC3.26□□□□□ -1.89
HLA-DOAP06340 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DOAP06340 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
HLA-DOAP06340 RNU6-527P-201ENST00000363425 104 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 Y_RNA.350-201ENST00000365409 98 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 Y_RNA.489-201ENST00000384410 101 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 RPL21P3-201ENST00000395517 478 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 RPL21P75-201ENST00000396599 483 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 RPL21P28-201ENST00000401418 483 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 RNU2-20P-201ENST00000410425 191 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 RPL26P27-201ENST00000414397 437 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 MTCO3P19-201ENST00000415864 321 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.25□□□□□ -1.89
HLA-DOAP06340 AL590556.1-201ENST00000423231 483 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC243964.1-201ENST00000441814 261 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC146507.2-201ENST00000460608 476 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 RPL21P39-201ENST00000463605 483 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC087190.1-201ENST00000484462 480 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC107032.1-201ENST00000485945 480 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC132942.1-201ENST00000486753 483 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC093591.1-201ENST00000491435 481 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 RPL21P16-201ENST00000495531 483 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 HMGB3P17-201ENST00000504195 649 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.25□□□□□ -1.89
HLA-DOAP06340 MIR4298-201ENST00000584380 73 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 HMGN2P15-201ENST00000585707 270 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC012433.1-201ENST00000588916 398 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
HLA-DOAP06340 AL109918.3-201ENST00000603072 338 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC011476.5-201ENST00000615594 130 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC073308.1-201ENST00000623696 305 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 U6.92-201ENST00000636464 89 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 AP001148.1-201ENST00000624124 2359 ntBASIC3.25□□□□□ -1.89
HLA-DOAP06340 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.25□□□□□ -1.89
HLA-DOAP06340 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.25□□□□□ -1.89
HLA-DOAP06340 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HLA-DOAP06340 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HLA-DOAP06340 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.24□□□□□ -1.89
HLA-DOAP06340 AF127577.6-201ENST00000623352 2191 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 OR56A5-201ENST00000340110 738 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 MIR148B-201ENST00000362252 99 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 MIR487A-201ENST00000385009 80 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 RNU6-847P-201ENST00000411115 108 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 AL358453.1-201ENST00000422522 250 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
HLA-DOAP06340 MTND4LP30-201ENST00000454092 297 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 RPL26P9-201ENST00000457466 433 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 RPL23AP49-201ENST00000492925 468 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.24□□□□□ -1.89
HLA-DOAP06340 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.24□□□□□ -1.89
HLA-DOAP06340 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.24□□□□□ -1.89
HLA-DOAP06340 AC007375.1-201ENST00000554513 578 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 AL391261.3-201ENST00000557194 520 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.24□□□□□ -1.89
HLA-DOAP06340 AC136932.1-201ENST00000574771 208 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 MIR3186-201ENST00000577404 85 ntBASIC3.24□□□□□ -1.89
HLA-DOAP06340 MIR3609-201ENST00000582661 80 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms