Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Gm45412-201ENSMUST00000210217 2275 ntBASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Gm8097-201ENSMUST00000117903 829 ntBASIC17.41■□□□□ 0.38
Trim54Q9ERP3 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Mir5126-201ENSMUST00000175513 77 ntBASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.41■□□□□ 0.38
Trim54Q9ERP3 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Gm5364-201ENSMUST00000216789 889 ntBASIC17.4■□□□□ 0.38
Trim54Q9ERP3 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Trim54Q9ERP3 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trim54Q9ERP3 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Gm12497-201ENSMUST00000138778 237 ntBASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Gm7230-201ENSMUST00000173026 815 ntBASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 AC132104.2-201ENSMUST00000215011 266 ntBASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.39■□□□□ 0.37
Trim54Q9ERP3 AC154527.4-201ENSMUST00000224364 1667 ntBASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim54Q9ERP3 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Trim54Q9ERP3 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim54Q9ERP3 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim54Q9ERP3 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Trim54Q9ERP3 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms