Protein–RNA interactions for Protein: Q91XZ7

Pcdhb3, Protocadherin beta 3, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb3Q91XZ7 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Gm5417-201ENSMUST00000079706 384 ntBASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 App-207ENSMUST00000227737 2827 ntBASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhb3Q91XZ7 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Gm20472-201ENSMUST00000174403 1240 ntBASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Gm16042-201ENSMUST00000204813 1247 ntBASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhb3Q91XZ7 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
Pcdhb3Q91XZ7 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Pcdhb3Q91XZ7 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Gm44711-201ENSMUST00000205414 1264 ntBASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Odf3b-204ENSMUST00000227834 930 ntBASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Pcdhb3Q91XZ7 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 Arhgef4-208ENSMUST00000211073 171 ntBASIC16.12■□□□□ 0.17
Pcdhb3Q91XZ7 AC156016.1-201ENSMUST00000227190 1035 ntBASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms