Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb4Q6P8W9 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb4Q6P8W9 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC16.87■□□□□ 0.29
Hmgb4Q6P8W9 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb4Q6P8W9 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC16.87■□□□□ 0.29
Hmgb4Q6P8W9 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb4Q6P8W9 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb4Q6P8W9 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC16.87■□□□□ 0.29
Hmgb4Q6P8W9 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb4Q6P8W9 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Hmgb4Q6P8W9 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb4Q6P8W9 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb4Q6P8W9 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb4Q6P8W9 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Gm18733-201ENSMUST00000173950 856 ntBASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Gm44430-201ENSMUST00000203376 995 ntBASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 AC160338.1-201ENSMUST00000214232 705 ntBASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb4Q6P8W9 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
Hmgb4Q6P8W9 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Hmgb4Q6P8W9 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Hmgb4Q6P8W9 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Hmgb4Q6P8W9 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb4Q6P8W9 Gm15442-201ENSMUST00000117905 1527 ntBASIC16.83■□□□□ 0.28
Hmgb4Q6P8W9 Gm15165-201ENSMUST00000118140 502 ntBASIC16.83■□□□□ 0.28
Hmgb4Q6P8W9 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb4Q6P8W9 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Hmgb4Q6P8W9 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb4Q6P8W9 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb4Q6P8W9 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb4Q6P8W9 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb4Q6P8W9 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
Hmgb4Q6P8W9 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms