Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
ShhQ62226 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC15.01□□□□□ -0.01
ShhQ62226 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
ShhQ62226 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 AC107711.5-202ENSMUST00000226429 702 ntBASIC15.01□□□□□ -0.01
ShhQ62226 Rps4l-201ENSMUST00000071745 943 ntBASIC15.01□□□□□ -0.01
ShhQ62226 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
ShhQ62226 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
ShhQ62226 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ShhQ62226 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
ShhQ62226 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC15□□□□□ -0.01
ShhQ62226 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC15□□□□□ -0.01
ShhQ62226 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC15□□□□□ -0.01
ShhQ62226 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
ShhQ62226 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
ShhQ62226 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
ShhQ62226 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
ShhQ62226 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC14.99□□□□□ -0.01
ShhQ62226 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC14.99□□□□□ -0.01
ShhQ62226 AC154621.1-201ENSMUST00000226155 1119 ntBASIC14.99□□□□□ -0.01
ShhQ62226 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
ShhQ62226 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
ShhQ62226 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
ShhQ62226 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Haglr-201ENSMUST00000100000 2085 ntBASIC14.98□□□□□ -0.01
ShhQ62226 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Gm7935-201ENSMUST00000100555 1278 ntBASIC14.98□□□□□ -0.01
ShhQ62226 Gm13186-201ENSMUST00000118031 316 ntBASIC14.98□□□□□ -0.01
ShhQ62226 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC14.98□□□□□ -0.01
ShhQ62226 Gm1818-201ENSMUST00000169406 1184 ntBASIC14.98□□□□□ -0.01
ShhQ62226 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14.98□□□□□ -0.01
ShhQ62226 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
ShhQ62226 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC14.98□□□□□ -0.01
ShhQ62226 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
ShhQ62226 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
ShhQ62226 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Gm15743-202ENSMUST00000182690 1901 ntBASIC14.98□□□□□ -0.01
ShhQ62226 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
ShhQ62226 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ShhQ62226 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
ShhQ62226 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
ShhQ62226 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ShhQ62226 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms