Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1h4Q60641 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1h4Q60641 AC153881.1-201ENSMUST00000214448 284 ntBASIC15.37■□□□□ 0.05
Nr1h4Q60641 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Nr1h4Q60641 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1h4Q60641 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1h4Q60641 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1h4Q60641 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC15.37■□□□□ 0.05
Nr1h4Q60641 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC15.37■□□□□ 0.05
Nr1h4Q60641 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Nr1h4Q60641 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Nr1h4Q60641 Zfp264-201ENSMUST00000208656 1563 ntBASIC15.36■□□□□ 0.05
Nr1h4Q60641 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Gm27463-201ENSMUST00000183569 57 ntBASIC15.36■□□□□ 0.05
Nr1h4Q60641 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Gm3375-201ENSMUST00000203929 796 ntBASIC15.36■□□□□ 0.05
Nr1h4Q60641 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Otx2os1-204ENSMUST00000227221 751 ntBASIC15.36■□□□□ 0.05
Nr1h4Q60641 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Phf7-203ENSMUST00000226565 1971 ntBASIC15.36■□□□□ 0.05
Nr1h4Q60641 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Nr1h4Q60641 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC15.35■□□□□ 0.05
Nr1h4Q60641 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC15.35■□□□□ 0.05
Nr1h4Q60641 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Nr1h4Q60641 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC15.35■□□□□ 0.05
Nr1h4Q60641 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Nr1h4Q60641 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
Nr1h4Q60641 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Nr1h4Q60641 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Nr1h4Q60641 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms