Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
Col28a1Q2UY11 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC15.7■□□□□ 0.1
Col28a1Q2UY11 Gm42473-201ENSMUST00000201056 2291 ntBASIC15.7■□□□□ 0.1
Col28a1Q2UY11 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col28a1Q2UY11 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col28a1Q2UY11 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col28a1Q2UY11 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC15.7■□□□□ 0.1
Col28a1Q2UY11 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Asic1-205ENSMUST00000228185 1818 ntBASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Ntrk2-205ENSMUST00000224402 2284 ntBASIC15.69■□□□□ 0.1
Col28a1Q2UY11 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 AC159205.6-201ENSMUST00000224935 887 ntBASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC15.68■□□□□ 0.1
Col28a1Q2UY11 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Gm6728-201ENSMUST00000178117 1065 ntBASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Col28a1Q2UY11 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Gm9731-201ENSMUST00000209480 747 ntBASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col28a1Q2UY11 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col28a1Q2UY11 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms