Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC13.73□□□□□ -0.21
Col8a1Q00780 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC13.73□□□□□ -0.21
Col8a1Q00780 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC13.73□□□□□ -0.21
Col8a1Q00780 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC13.73□□□□□ -0.21
Col8a1Q00780 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC13.73□□□□□ -0.21
Col8a1Q00780 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC13.73□□□□□ -0.21
Col8a1Q00780 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC13.73□□□□□ -0.21
Col8a1Q00780 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC13.73□□□□□ -0.21
Col8a1Q00780 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col8a1Q00780 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC13.72□□□□□ -0.21
Col8a1Q00780 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC13.72□□□□□ -0.21
Col8a1Q00780 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
Col8a1Q00780 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
Col8a1Q00780 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC13.72□□□□□ -0.21
Col8a1Q00780 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC13.72□□□□□ -0.21
Col8a1Q00780 Mir6956-201ENSMUST00000183598 62 ntBASIC13.72□□□□□ -0.21
Col8a1Q00780 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC13.72□□□□□ -0.21
Col8a1Q00780 Wdyhv1-206ENSMUST00000227142 786 ntBASIC13.72□□□□□ -0.21
Col8a1Q00780 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC13.72□□□□□ -0.21
Col8a1Q00780 Gm15500-202ENSMUST00000071641 1019 ntBASIC13.72□□□□□ -0.21
Col8a1Q00780 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC13.72□□□□□ -0.21
Col8a1Q00780 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col8a1Q00780 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Gm4459-201ENSMUST00000118750 468 ntBASIC13.71□□□□□ -0.21
Col8a1Q00780 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC13.71□□□□□ -0.21
Col8a1Q00780 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC13.71□□□□□ -0.21
Col8a1Q00780 AC084391.1-201ENSMUST00000200651 141 ntBASIC13.71□□□□□ -0.21
Col8a1Q00780 Gm44872-201ENSMUST00000207864 420 ntBASIC13.71□□□□□ -0.21
Col8a1Q00780 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Gfra2-202ENSMUST00000227633 1480 ntBASIC13.71□□□□□ -0.21
Col8a1Q00780 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col8a1Q00780 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Col8a1Q00780 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col8a1Q00780 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col8a1Q00780 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col8a1Q00780 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col8a1Q00780 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
Col8a1Q00780 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Gm15442-201ENSMUST00000117905 1527 ntBASIC13.7□□□□□ -0.22
Col8a1Q00780 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC13.7□□□□□ -0.22
Col8a1Q00780 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC13.7□□□□□ -0.22
Col8a1Q00780 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC13.7□□□□□ -0.22
Col8a1Q00780 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC13.7□□□□□ -0.22
Col8a1Q00780 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC13.7□□□□□ -0.22
Col8a1Q00780 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms