Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Nkx3-1P97436 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Gm8097-201ENSMUST00000117903 829 ntBASIC13.91□□□□□ -0.18
Nkx3-1P97436 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC13.91□□□□□ -0.18
Nkx3-1P97436 Gm25925-201ENSMUST00000158314 306 ntBASIC13.91□□□□□ -0.18
Nkx3-1P97436 Gm36967-201ENSMUST00000193814 266 ntBASIC13.91□□□□□ -0.18
Nkx3-1P97436 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Gm15590-201ENSMUST00000078419 552 ntBASIC13.91□□□□□ -0.18
Nkx3-1P97436 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Nkx3-1P97436 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Nkx3-1P97436 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC13.9□□□□□ -0.18
Nkx3-1P97436 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Gm8655-201ENSMUST00000221159 852 ntBASIC13.9□□□□□ -0.18
Nkx3-1P97436 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC13.9□□□□□ -0.18
Nkx3-1P97436 AC154757.1-201ENSMUST00000228289 336 ntBASIC13.9□□□□□ -0.18
Nkx3-1P97436 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Nkx3-1P97436 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
Nkx3-1P97436 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Nkx3-1P97436 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Gm11779-201ENSMUST00000118541 368 ntBASIC13.89□□□□□ -0.19
Nkx3-1P97436 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC13.89□□□□□ -0.19
Nkx3-1P97436 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Gm2213-201ENSMUST00000197485 688 ntBASIC13.89□□□□□ -0.19
Nkx3-1P97436 Gm6089-201ENSMUST00000197666 938 ntBASIC13.89□□□□□ -0.19
Nkx3-1P97436 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC13.89□□□□□ -0.19
Nkx3-1P97436 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC13.89□□□□□ -0.19
Nkx3-1P97436 Psmb5-202ENSMUST00000227257 622 ntBASIC13.89□□□□□ -0.19
Nkx3-1P97436 AC159093.1-201ENSMUST00000227779 380 ntBASIC13.89□□□□□ -0.19
Nkx3-1P97436 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC13.89□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms