Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Rfx1P48377 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC19.32■□□□□ 0.68
Rfx1P48377 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rfx1P48377 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Rfx1P48377 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC19.31■□□□□ 0.68
Rfx1P48377 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Rfx1P48377 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.31■□□□□ 0.68
Rfx1P48377 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Rfx1P48377 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.31■□□□□ 0.68
Rfx1P48377 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC19.31■□□□□ 0.68
Rfx1P48377 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
Rfx1P48377 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rfx1P48377 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Rfx1P48377 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC19.31■□□□□ 0.68
Rfx1P48377 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.3■□□□□ 0.68
Rfx1P48377 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
Rfx1P48377 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rfx1P48377 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC19.29■□□□□ 0.68
Rfx1P48377 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Rfx1P48377 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC19.29■□□□□ 0.68
Rfx1P48377 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.29■□□□□ 0.68
Rfx1P48377 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Timm23-208ENSMUST00000226683 750 ntBASIC19.29■□□□□ 0.68
Rfx1P48377 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Rfx1P48377 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Rfx1P48377 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC19.29■□□□□ 0.68
Rfx1P48377 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rfx1P48377 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rfx1P48377 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Rfx1P48377 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.28■□□□□ 0.68
Rfx1P48377 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Rfx1P48377 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Rfx1P48377 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rfx1P48377 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rfx1P48377 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rfx1P48377 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rfx1P48377 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rfx1P48377 AC159205.3-201ENSMUST00000224614 874 ntBASIC19.28■□□□□ 0.68
Rfx1P48377 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rfx1P48377 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rfx1P48377 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rfx1P48377 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
Rfx1P48377 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rfx1P48377 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rfx1P48377 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rfx1P48377 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms