Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Cdx1P18111 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdx1P18111 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx1P18111 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx1P18111 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx1P18111 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx1P18111 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
Cdx1P18111 Ccdc166-201ENSMUST00000182172 2584 ntBASIC13.06□□□□□ -0.32
Cdx1P18111 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Cdx1P18111 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC13.06□□□□□ -0.32
Cdx1P18111 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC13.06□□□□□ -0.32
Cdx1P18111 AC175538.1-201ENSMUST00000225343 1269 ntBASIC13.06□□□□□ -0.32
Cdx1P18111 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx1P18111 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx1P18111 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx1P18111 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Cdx1P18111 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Cdx1P18111 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
Cdx1P18111 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Cdx1P18111 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
Cdx1P18111 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Cdx1P18111 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC13.05□□□□□ -0.32
Cdx1P18111 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC13.05□□□□□ -0.32
Cdx1P18111 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 AC124581.1-201ENSMUST00000225416 1399 ntBASIC13.05□□□□□ -0.32
Cdx1P18111 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Cdx1P18111 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Cdx1P18111 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
Cdx1P18111 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Cdx1P18111 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Cdx1P18111 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Gm6433-201ENSMUST00000118634 875 ntBASIC13.04□□□□□ -0.32
Cdx1P18111 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Gm9987-201ENSMUST00000069768 567 ntBASIC13.04□□□□□ -0.32
Cdx1P18111 Gm5417-201ENSMUST00000079706 384 ntBASIC13.04□□□□□ -0.32
Cdx1P18111 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Cdx1P18111 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Cdx1P18111 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC13.04□□□□□ -0.32
Cdx1P18111 AC125311.2-201ENSMUST00000227477 1940 ntBASIC13.03□□□□□ -0.32
Cdx1P18111 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC13.03□□□□□ -0.32
Cdx1P18111 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Cdx1P18111 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Cdx1P18111 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
Cdx1P18111 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
Cdx1P18111 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC13.03□□□□□ -0.32
Cdx1P18111 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Cdx1P18111 Gm20472-201ENSMUST00000174403 1240 ntBASIC13.03□□□□□ -0.32
Cdx1P18111 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 AC153881.2-201ENSMUST00000214877 204 ntBASIC13.03□□□□□ -0.32
Cdx1P18111 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Cdx1P18111 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms