Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC15.28■□□□□ 0.04
Lire1P11260 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Lire1P11260 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
Lire1P11260 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC15.28■□□□□ 0.04
Lire1P11260 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Lire1P11260 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC15.28■□□□□ 0.04
Lire1P11260 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Lire1P11260 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Lire1P11260 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Lire1P11260 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Lire1P11260 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Lire1P11260 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Lire1P11260 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC15.27■□□□□ 0.04
Lire1P11260 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Lire1P11260 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Lire1P11260 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Lire1P11260 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC15.27■□□□□ 0.04
Lire1P11260 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Lire1P11260 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Lire1P11260 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Lire1P11260 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC15.27■□□□□ 0.04
Lire1P11260 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC15.27■□□□□ 0.04
Lire1P11260 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Lire1P11260 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Lire1P11260 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Lire1P11260 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Lire1P11260 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC15.27■□□□□ 0.04
Lire1P11260 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Lire1P11260 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Lire1P11260 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Lire1P11260 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Lire1P11260 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC15.27■□□□□ 0.03
Lire1P11260 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Lire1P11260 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Lire1P11260 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
Lire1P11260 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Lire1P11260 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Lire1P11260 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Lire1P11260 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Lire1P11260 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC15.27■□□□□ 0.03
Lire1P11260 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Lire1P11260 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Lire1P11260 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC15.26■□□□□ 0.03
Lire1P11260 Gm27389-201ENSMUST00000183622 195 ntBASIC15.26■□□□□ 0.03
Lire1P11260 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Lire1P11260 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lire1P11260 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Lire1P11260 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lire1P11260 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lire1P11260 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Lire1P11260 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Lire1P11260 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lire1P11260 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Lire1P11260 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
Lire1P11260 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC15.25■□□□□ 0.03
Lire1P11260 Gm9013-201ENSMUST00000132939 882 ntBASIC15.25■□□□□ 0.03
Lire1P11260 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC15.25■□□□□ 0.03
Lire1P11260 Gm17661-201ENSMUST00000170317 270 ntBASIC15.25■□□□□ 0.03
Lire1P11260 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Lire1P11260 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Lire1P11260 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lire1P11260 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lire1P11260 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Lire1P11260 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lire1P11260 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Lire1P11260 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Lire1P11260 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lire1P11260 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Lire1P11260 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15.25■□□□□ 0.03
Lire1P11260 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lire1P11260 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lire1P11260 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Lire1P11260 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Lire1P11260 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lire1P11260 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC15.24■□□□□ 0.03
Lire1P11260 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lire1P11260 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lire1P11260 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lire1P11260 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC15.24■□□□□ 0.03
Lire1P11260 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lire1P11260 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lire1P11260 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lire1P11260 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lire1P11260 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms