Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Chmp6P0C0A3 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Gm27704-201ENSMUST00000185094 107 ntBASIC17.56■□□□□ 0.4
Chmp6P0C0A3 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Chmp6P0C0A3 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chmp6P0C0A3 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Gm45328-201ENSMUST00000210942 917 ntBASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 AC154471.1-201ENSMUST00000224418 436 ntBASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Ptprs-211ENSMUST00000223859 5588 ntBASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Chmp6P0C0A3 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms