Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC14.6□□□□□ -0.07
Lmx1bO88609 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC14.6□□□□□ -0.07
Lmx1bO88609 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Lmx1bO88609 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Gm13884-201ENSMUST00000118103 829 ntBASIC14.6□□□□□ -0.07
Lmx1bO88609 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Gm15372-201ENSMUST00000120729 834 ntBASIC14.6□□□□□ -0.07
Lmx1bO88609 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Lmx1bO88609 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Lmx1bO88609 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC14.6□□□□□ -0.07
Lmx1bO88609 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC14.6□□□□□ -0.07
Lmx1bO88609 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lmx1bO88609 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
Lmx1bO88609 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lmx1bO88609 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Lmx1bO88609 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lmx1bO88609 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Lmx1bO88609 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Lmx1bO88609 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
Lmx1bO88609 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lmx1bO88609 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC14.59□□□□□ -0.07
Lmx1bO88609 Rprl3-201ENSMUST00000157400 290 ntBASIC14.59□□□□□ -0.07
Lmx1bO88609 Mir8098-201ENSMUST00000184011 137 ntBASIC14.59□□□□□ -0.07
Lmx1bO88609 Gm44771-201ENSMUST00000206975 626 ntBASIC14.59□□□□□ -0.07
Lmx1bO88609 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC14.59□□□□□ -0.07
Lmx1bO88609 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC14.59□□□□□ -0.07
Lmx1bO88609 AC164629.2-201ENSMUST00000217916 270 ntBASIC14.59□□□□□ -0.07
Lmx1bO88609 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lmx1bO88609 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Lmx1bO88609 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Lmx1bO88609 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lmx1bO88609 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lmx1bO88609 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lmx1bO88609 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Lmx1bO88609 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
Lmx1bO88609 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC14.58□□□□□ -0.07
Lmx1bO88609 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Lmx1bO88609 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Lmx1bO88609 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Lmx1bO88609 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Lmx1bO88609 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Lmx1bO88609 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Lmx1bO88609 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Lmx1bO88609 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
Lmx1bO88609 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Lmx1bO88609 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Lmx1bO88609 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Lmx1bO88609 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
Lmx1bO88609 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Lmx1bO88609 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC14.58□□□□□ -0.08
Lmx1bO88609 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC14.58□□□□□ -0.08
Lmx1bO88609 AC159301.1-201ENSMUST00000225130 1182 ntBASIC14.58□□□□□ -0.08
Lmx1bO88609 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Lmx1bO88609 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Lmx1bO88609 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Lmx1bO88609 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC14.57□□□□□ -0.08
Lmx1bO88609 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC14.57□□□□□ -0.08
Lmx1bO88609 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Lmx1bO88609 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC14.57□□□□□ -0.08
Lmx1bO88609 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
Lmx1bO88609 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC14.57□□□□□ -0.08
Lmx1bO88609 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC14.57□□□□□ -0.08
Lmx1bO88609 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Lmx1bO88609 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Lmx1bO88609 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lmx1bO88609 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
Lmx1bO88609 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lmx1bO88609 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lmx1bO88609 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lmx1bO88609 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lmx1bO88609 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lmx1bO88609 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms