Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarce1O54941 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarce1O54941 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarce1O54941 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Smarce1O54941 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC19.19■□□□□ 0.66
Smarce1O54941 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Smarce1O54941 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarce1O54941 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smarce1O54941 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smarce1O54941 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Smarce1O54941 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarce1O54941 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarce1O54941 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarce1O54941 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC19.18■□□□□ 0.66
Smarce1O54941 Mir1668-201ENSMUST00000184114 107 ntBASIC19.18■□□□□ 0.66
Smarce1O54941 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Smarce1O54941 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarce1O54941 Gm15442-201ENSMUST00000117905 1527 ntBASIC19.18■□□□□ 0.66
Smarce1O54941 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarce1O54941 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smarce1O54941 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Smarce1O54941 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarce1O54941 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarce1O54941 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Gm44616-201ENSMUST00000206417 1732 ntBASIC19.17■□□□□ 0.66
Smarce1O54941 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
Smarce1O54941 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Ptprs-211ENSMUST00000223859 5588 ntBASIC19.17■□□□□ 0.66
Smarce1O54941 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Smarce1O54941 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Gm3272-201ENSMUST00000181181 1229 ntBASIC19.17■□□□□ 0.66
Smarce1O54941 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Gm10566-201ENSMUST00000086739 996 ntBASIC19.17■□□□□ 0.66
Smarce1O54941 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Smarce1O54941 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Smarce1O54941 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Smarce1O54941 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarce1O54941 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Smarce1O54941 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Rbfox2-206ENSMUST00000227314 1810 ntBASIC19.16■□□□□ 0.66
Smarce1O54941 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC19.16■□□□□ 0.66
Smarce1O54941 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Smarce1O54941 Prob1-201ENSMUST00000097619 3021 ntBASIC19.16■□□□□ 0.66
Smarce1O54941 Gm16011-201ENSMUST00000121567 2662 ntBASIC19.16■□□□□ 0.66
Smarce1O54941 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC19.16■□□□□ 0.66
Smarce1O54941 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC19.16■□□□□ 0.66
Smarce1O54941 AC122351.1-201ENSMUST00000220467 126 ntBASIC19.16■□□□□ 0.66
Smarce1O54941 AC159205.6-201ENSMUST00000224935 887 ntBASIC19.16■□□□□ 0.66
Smarce1O54941 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Smarce1O54941 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarce1O54941 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Smarce1O54941 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Smarce1O54941 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smarce1O54941 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Smarce1O54941 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Smarce1O54941 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smarce1O54941 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Smarce1O54941 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms