Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC004383.1-201ENST00000438135 289 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 RPS29P26-201ENST00000477483 171 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 RNU7-175P-201ENST00000515915 61 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-120P-201ENST00000516077 103 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 GNAI2P1-201ENST00000541815 315 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AC007375.1-201ENST00000554513 578 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AC104581.2-201ENST00000572227 430 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AL355802.3-201ENST00000607571 545 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AC006157.1-201ENST00000611750 366 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 AL138825.1-201ENST00000618587 192 ntBASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.27□□□□□ -1.89
LIMCH1Q9UPQ0 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 SNORD114-19-201ENST00000363072 75 ntBASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 RNU2-23P-201ENST00000410545 195 ntBASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 AC144568.1-201ENST00000520139 137 ntBASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 HSPE1P4-201ENST00000550617 308 ntBASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 AC004584.2-201ENST00000570407 410 ntBASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 AC040896.1-201ENST00000613819 479 ntBASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 AC137590.2-201ENST00000619709 240 ntBASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 AC110079.1-202ENST00000635213 138 ntBASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
LIMCH1Q9UPQ0 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 Y_RNA.39-201ENST00000362620 98 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 Y_RNA.80-201ENST00000362996 102 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 Y_RNA.314-201ENST00000365114 102 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 RNY1P14-201ENST00000384426 108 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-1160P-201ENST00000384546 104 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 MIR606-201ENST00000384851 96 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 AC244670.1-201ENST00000436879 112 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 AL353705.4-201ENST00000449661 238 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 RPL30P12-201ENST00000474666 353 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-475P-201ENST00000516073 104 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 RNA5SP341-201ENST00000516261 117 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 AC092447.9-201ENST00000603395 144 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 AC100812.1-201ENST00000607622 580 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 SCARNA4-201ENST00000629045 128 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 AC099654.7-201ENST00000635788 2127 ntBASIC3.25□□□□□ -1.89
LIMCH1Q9UPQ0 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-1285P-201ENST00000363480 105 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 Y_RNA.148-201ENST00000363557 117 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 Y_RNA.364-201ENST00000365532 101 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 CD24P4-201ENST00000382840 243 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 Y_RNA.496-201ENST00000384444 101 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 Y_RNA.504-201ENST00000384481 104 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 AC009414.1-201ENST00000427200 443 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 AL139132.1-201ENST00000431587 344 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 GPM6BP3-201ENST00000442797 145 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 RPL23AP75-201ENST00000491601 451 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 SNORA74D-201ENST00000516404 141 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 SNORA70.24-201ENST00000517233 118 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 AC021231.3-201ENST00000558497 370 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 MIR5571-201ENST00000577998 113 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.24□□□□□ -1.89
LIMCH1Q9UPQ0 SNORA12.2-201ENST00000391040 156 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 MRPL42P3-201ENST00000401492 326 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 RNA5SP494-201ENST00000410653 129 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 EEF1A1P41-201ENST00000414667 207 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 AC112220.1-201ENST00000434628 355 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 RPS3AP12-201ENST00000443616 753 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 snoU13.30-201ENST00000458951 104 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 AP001324.2-201ENST00000461163 319 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 SNRPGP7-201ENST00000469016 106 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 RPL22P13-201ENST00000493291 347 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 AC015911.1-201ENST00000495111 156 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms