Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AL590002.1-201ENST00000406554 418 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 RNA5SP201-201ENST00000410316 124 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 RNU2-32P-201ENST00000411193 191 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AL589823.1-201ENST00000429577 183 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AC016632.1-201ENST00000503994 196 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AC007375.1-201ENST00000554513 578 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 SCOCP1-201ENST00000554676 349 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AC026271.5-201ENST00000577873 130 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AL160281.1-201ENST00000605307 311 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AC005520.5-201ENST00000613926 164 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 AL359314.1-201ENST00000616913 261 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 SNORD98-201ENST00000636377 67 ntBASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
RPUSD4Q96CM3 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 Y_RNA.3-201ENST00000362331 103 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 RNA5SP289-201ENST00000362332 137 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 Y_RNA.9-201ENST00000362354 101 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 snoU2_19.1-201ENST00000362361 80 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 Y_RNA.402-201ENST00000383972 102 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 HMGN2P39-201ENST00000398005 273 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 RN7SKP284-201ENST00000411002 343 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 RNA5SP270-201ENST00000411361 118 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 SRIP3-201ENST00000413200 219 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 UBE2V1P4-201ENST00000425374 344 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 HMGN2P26-201ENST00000463169 339 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 RPS29P27-201ENST00000463711 170 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 AC132942.1-201ENST00000486753 483 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 TRBVA-201ENST00000498804 316 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 AC008628.2-201ENST00000502605 298 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 Y_RNA.665-201ENST00000516177 98 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 RNU6-1038P-201ENST00000516516 104 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 SCARNA16.3-201ENST00000516595 184 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 Y_RNA.704-201ENST00000516851 102 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 RNU6-667P-201ENST00000517186 102 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 RNU2-19P-201ENST00000517288 84 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 AC016957.1-201ENST00000534895 309 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 MIR3126-201ENST00000577443 74 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 MIR4287-201ENST00000579398 78 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 MIR3162-201ENST00000581818 82 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 AC078899.2-201ENST00000595282 212 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 AC107304.1-201ENST00000604229 296 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 AC104458.1-201ENST00000608243 463 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 AC090517.3-201ENST00000625170 141 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 SNORA43.4-201ENST00000629559 138 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 AC243829.7-201ENST00000633081 225 ntBASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
RPUSD4Q96CM3 AC009487.4-201ENST00000624969 3585 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 MTND4P23-201ENST00000447723 1363 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 RNU6-128P-201ENST00000383976 107 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 MIR29C-201ENST00000385231 88 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 SNORD73A-201ENST00000386062 65 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 SNORA11.4-201ENST00000408823 129 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 HMGN2P19-201ENST00000425149 265 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 NDUFA5P4-201ENST00000436704 385 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AL137159.1-201ENST00000452808 512 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 RPL23AP42-201ENST00000471152 471 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 SNORA4.4-201ENST00000515921 135 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 RNU6-314P-201ENST00000516574 104 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 RNU6-567P-201ENST00000516746 107 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 HSPE1P4-201ENST00000550617 308 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AC021231.3-201ENST00000558497 370 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 CPDP1-201ENST00000579660 283 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AC010525.2-201ENST00000590920 195 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AL357078.3-201ENST00000607528 618 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AC064836.2-201ENST00000609491 462 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AL121757.2-201ENST00000611223 313 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AC005296.1-201ENST00000616145 209 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AL136221.1-201ENST00000621449 509 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 MIR6873-201ENST00000622788 63 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 AP006437.1-201ENST00000641440 3685 ntBASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
RPUSD4Q96CM3 Y_RNA.38-201ENST00000362617 102 ntBASIC1.59□□□□□ -2.15
RPUSD4Q96CM3 RNU6-227P-201ENST00000362865 103 ntBASIC1.59□□□□□ -2.15
RPUSD4Q96CM3 Y_RNA.100-201ENST00000363141 102 ntBASIC1.59□□□□□ -2.15
RPUSD4Q96CM3 U3.13-201ENST00000364804 214 ntBASIC1.59□□□□□ -2.15
RPUSD4Q96CM3 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms